View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_high_28 (Length: 278)
Name: NF16149_high_28
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 108 - 268
Target Start/End: Original strand, 13206830 - 13206991
Alignment:
| Q |
108 |
acaatctctaaagggacaatagaatttctctgaaacaaacaaagcctcgcacaacgccttacaccagctttcaaaaagctcggccggaagaatagaacgg |
207 |
Q |
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| T |
13206830 |
acaatctctaaagggacaatagaatttctctaaaacaaacaaagcctcgcacaacgccttacaccagcgttcaaaaaggaccacaggaagaatagaacga |
13206929 |
T |
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| Q |
208 |
caaaactcagcttctaac-aacccactgcacccggaaacaggacaccgaacgttgatgatgt |
268 |
Q |
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| T |
13206930 |
cataactcagcttctagcaaaaccattgcacccagaaacaggacaccgaacgttgatgatgt |
13206991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 43920842 - 43920995
Alignment:
| Q |
30 |
tgcacaaaacatcctattacagtgaggacattctgaatttctaattgcctcagttccttccttgatcaaaagagcagaacaatctctaaagggacaatag |
129 |
Q |
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| T |
43920842 |
tgcacaaaacatcatattactatgacgacattctgaatttgtaattgccacatttccgt-----atcaaaagagaagaacaatctgtaaagggacaatag |
43920936 |
T |
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| Q |
130 |
aatttct-ctgaaacaaacaaagcctcgcacaacgccttacaccagctttcaaaaagctc |
188 |
Q |
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| T |
43920937 |
aatttctcccgaaacaaacaaagcctcgcacaacg-cttacaccatcgttcaaaaagctc |
43920995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 19314965 - 19314772
Alignment:
| Q |
22 |
ttacattttgcacaaaacatcctattacagtgaggacattctgaatttctaattgcctcagttccttccttgatcaaaagagcagaacaatctctaaagg |
121 |
Q |
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| T |
19314965 |
ttacattgtgcacaaaacatcctattacaattagggcattctgaatttctaacagcttccgttccatcatcgatcaaaagtgctgaacagtctggaaatg |
19314866 |
T |
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| Q |
122 |
gacaatagaatttctctgaaaca---aacaaagcctcgcacaacgccttacaccagctttcaaaaagctcggccggaagaatagaacggcaaaa |
212 |
Q |
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| T |
19314865 |
gacaatagaatttattcgaaacatcgaacaaagcctcacaaagcgccttaccccaccgttcaaaaaccttggccggaagaatagaacggcaaaa |
19314772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 19270678 - 19270475
Alignment:
| Q |
21 |
cttacattttgcacaaaacatcctattacagtgaggacattctgaatttctaattgcctcagttccttccttgatcaaaagagcagaacaatctctaaag |
120 |
Q |
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| T |
19270678 |
cttacattttgcacaaaacatcctattacaattaggacattctgagtttttaacagtatcgattccgtcattgatcaaaagagcagaacagtctgcaaag |
19270579 |
T |
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| Q |
121 |
ggacaatagaatttctctgaaaca---aacaaagcctcgcacaacgccttacaccagctttcaaaaagctcggccggaagaatagaacggcaaaactcag |
217 |
Q |
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| T |
19270578 |
ggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcggcaggcagaataaaacggcaaaactccg |
19270479 |
T |
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| Q |
218 |
cttc |
221 |
Q |
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|||| |
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| T |
19270478 |
cttc |
19270475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 19260486 - 19260440
Alignment:
| Q |
23 |
tacattttgcacaaaacatcctattacagtgaggacattctgaattt |
69 |
Q |
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| T |
19260486 |
tacattgtgcataaaacatcctattacaattaggacattctgaattt |
19260440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 19254969 - 19254722
Alignment:
| Q |
22 |
ttacattttgcacaaaacatcctattacagtgaggacattctgaatttctaattgcctcagttccttccttgatcaaaagagcagaacaatctctaaagg |
121 |
Q |
| |
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||||||| |||||| |||||||| | ||| | ||||||||||| || ||| ||||| ||| | || |||||||| ||||| ||||| ||| ||||| |
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| T |
19254969 |
ttacattgtgcacagaacatcctttcacaataaggacattctgctttcataacagcctccgtttcatcattgatcaacagagctgaacagtctgcaaagg |
19254870 |
T |
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| Q |
122 |
gacaatagaatttctctgaaaca---aacaaagcctcgcacaacgccttacaccagctttcaaaaagctcggccggaagaatagaacggcaaaactcagc |
218 |
Q |
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| T |
19254869 |
gacagtagaatttttccgaatcatcaatcaacacctcgcaagacgcgttcccccatcggtcaaaaacctcggcaggaagaatcgactggcaatagtccga |
19254770 |
T |
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| Q |
219 |
ttctaacaacccactgcacccggaaacaggacaccgaacgttgatgat |
266 |
Q |
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||| ||||| |||||||| || |||| ||||||||||| ||||||||| |
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| T |
19254769 |
ttccaacaaaccactgcatccagaaaaaggacaccgaatgttgatgat |
19254722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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