View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16149_high_33 (Length: 256)

Name: NF16149_high_33
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16149_high_33
NF16149_high_33
[»] chr1 (7 HSPs)
chr1 (63-251)||(25670504-25670692)
chr1 (71-251)||(4438706-4438886)
chr1 (63-149)||(4433928-4434014)
chr1 (63-149)||(25665723-25665809)
chr1 (65-149)||(49359642-49359726)
chr1 (65-149)||(49361938-49362022)
chr1 (63-108)||(50546060-50546105)
[»] chr2 (3 HSPs)
chr2 (77-251)||(12327137-12327311)
chr2 (63-149)||(12332004-12332090)
chr2 (66-175)||(6257702-6257811)
[»] chr6 (4 HSPs)
chr6 (63-175)||(20756344-20756456)
chr6 (84-174)||(12795966-12796056)
chr6 (63-107)||(18970658-18970702)
chr6 (63-114)||(15997531-15997582)
[»] chr4 (7 HSPs)
chr4 (63-175)||(21436559-21436671)
chr4 (66-150)||(17736585-17736669)
chr4 (64-150)||(31138694-31138780)
chr4 (66-150)||(31136033-31136117)
chr4 (63-175)||(43428477-43428589)
chr4 (84-175)||(51205875-51205966)
chr4 (68-114)||(33581133-33581179)
[»] scaffold0159 (1 HSPs)
scaffold0159 (63-149)||(28155-28241)
[»] chr8 (3 HSPs)
chr8 (63-150)||(28540327-28540414)
chr8 (66-149)||(37811173-37811256)
chr8 (63-107)||(16723684-16723728)
[»] chr3 (6 HSPs)
chr3 (66-150)||(54524648-54524732)
chr3 (63-158)||(54516963-54517058)
chr3 (63-149)||(40934791-40934877)
chr3 (63-149)||(36244111-36244197)
chr3 (102-174)||(38019336-38019408)
chr3 (66-107)||(20111906-20111947)
[»] chr7 (2 HSPs)
chr7 (72-150)||(38539793-38539871)
chr7 (89-150)||(38539982-38540043)
[»] chr5 (2 HSPs)
chr5 (63-150)||(33573985-33574073)
chr5 (63-107)||(35424267-35424311)
[»] scaffold1370 (1 HSPs)
scaffold1370 (63-107)||(203-247)
[»] scaffold0285 (1 HSPs)
scaffold0285 (63-107)||(17542-17586)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 63 - 251
Target Start/End: Complemental strand, 25670692 - 25670504
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25670692 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagt 25670593  T
Q  163 gaatcacgtgacatctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcatctcac 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25670592 gaatcacgtgacatctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcttctcac 25670504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 71 - 251
Target Start/End: Complemental strand, 4438886 - 4438706
Alignment:
Q  71 caaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacg 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4438886 caaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacg 4438787  T
Q  171 tgacatctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcatctcac 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4438786 tgacatctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcttctcac 4438706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 4433928 - 4434014
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4433928 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 4434014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 25665723 - 25665809
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25665723 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 25665809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 49359642 - 49359726
Alignment:
Q  65 gcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 149  Q
    ||||||||||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  49359642 gcatttcaaatgagaggagtttttaaatgagagggtgagaggatgaaacagtggccattggattagttagatggctgtgattaaa 49359726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 49362022 - 49361938
Alignment:
Q  65 gcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 149  Q
    ||||||||||| ||||||||||| |||||||| | | ||||||||||||||||||| ||| |||| |||||||||||||||||||    
T  49362022 gcatttcaaatgagaggagtttttaaatgagaaggtgagaggatgaaacagtggccgttgaattagttagatggctgtgattaaa 49361938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 50546105 - 50546060
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggat 108  Q
    |||||| |||| |||||||| ||||||||||||||| |||||||||    
T  50546105 gggcatatcaagtaagaggacttttaaaatgagagggtaagaggat 50546060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 77 - 251
Target Start/End: Original strand, 12327137 - 12327311
Alignment:
Q  77 agaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacgtgacat 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12327137 agaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacgtgacat 12327236  T
Q  177 ctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcatctcac 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12327237 ctcttcacccccatttcagatgcgcgttgctcactctctctcacttcctttctaacatacgattcttcttctcac 12327311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 12332090 - 12332004
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 149  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12332090 gggcatttcaaataagaggagttttaaaatgagaggttaagaggatgaaacagtggccattggattaattagatggctgtgattaaa 12332004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 6257811 - 6257702
Alignment:
Q  66 catttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaa 165  Q
    |||||||||| |||||| |||| |||||||| | | |||||||||||| |||||| || ||||| |||||||||||||||| ||||||||||| |||       
T  6257811 catttcaaatgagaggactttttaaatgagaaggtgagaggatgaaactgtggcctttagattatttagatggctgtgatttaattctcacattagtagg 6257712  T
Q  166 tcacgtgaca 175  Q
    ||||||||||    
T  6257711 tcacgtgaca 6257702  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 20756456 - 20756344
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagt 162  Q
    ||||||||||||| ||||||||||| |||||||||| | |||| |||||| ||||||||||||||||| |||||| |||||||| ||||||||||| |||    
T  20756456 gggcatttcaaatgagaggagtttttaaatgagagggtgagagcatgaaatagtggccattggattaaatagatgcctgtgatttaattctcacattagt 20756357  T
Q  163 gaatcacgtgaca 175  Q
     | ||||||||||    
T  20756356 aactcacgtgaca 20756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 12796056 - 12795966
Alignment:
Q  84 ttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacgtgac 174  Q
    |||| |||||||||||| |||||| ||||||||| ||||||||||| ||||||| || ||||| ||||  | ||| ||||| |||||||||    
T  12796056 tttttaaatgagaggatgagaggaagaaacagtgaccattggattagttagatgactatgatttaatttactcattagtgagtcacgtgac 12795966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 18970702 - 18970658
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagagga 107  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  18970702 gggcatttcaaataagaggacttttaaaatgagaggatgagagga 18970658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 15997582 - 15997531
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaaca 114  Q
    ||||||||||||| ||||||||||| |||||||||| | |||||||||||||    
T  15997582 gggcatttcaaatgagaggagtttttaaatgagagggtgagaggatgaaaca 15997531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 21436559 - 21436671
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagt 162  Q
    ||||||||||||| ||||||||||| |||||||||| | |||| |||||| ||||||||||||||||| |||||| |||||||| ||||||||||| |||    
T  21436559 gggcatttcaaatgagaggagtttttaaatgagagggtgagagcatgaaatagtggccattggattaaatagatgactgtgatttaattctcacattagt 21436658  T
Q  163 gaatcacgtgaca 175  Q
     | ||||||||||    
T  21436659 aactcacgtgaca 21436671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 17736585 - 17736669
Alignment:
Q  66 catttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 150  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||| |||||||    
T  17736585 catttcaaatgagaggagttttaaaatgagaggatgagagcatgaaatagtggccattggattaaatagatggctgttattaaat 17736669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 31138780 - 31138694
Alignment:
Q  64 ggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 150  Q
    |||||||||||| ||||||||||||||||||||| || |||| |||||| ||||| ||||||||||| ||||||||||| |||||||    
T  31138780 ggcatttcaaatgagaggagttttaaaatgagagcatgagagcatgaaatagtggtcattggattaaatagatggctgttattaaat 31138694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 31136033 - 31136117
Alignment:
Q  66 catttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 150  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||| ||||| |||||| |||| |||||||    
T  31136033 catttcaaatgagaggagttttaaaatgagaggatgagagcatgaaatagtggccattgaattaaatagatgactgttattaaat 31136117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 43428477 - 43428589
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagt 162  Q
    |||||||| |||| |||||| |||| |||||||||| | |||||||||||| |||||| ||  |||| |||||||||||||||| ||||||||||| |||    
T  43428477 gggcattttaaatgagaggactttttaaatgagagggtgagaggatgaaactgtggcctttaaattatttagatggctgtgatttaattctcacattagt 43428576  T
Q  163 gaatcacgtgaca 175  Q
       ||||||||||    
T  43428577 aggtcacgtgaca 43428589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 51205875 - 51205966
Alignment:
Q  84 ttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacgtgaca 175  Q
    |||| |||||||||  | |||||||||||| |||||| |||||||| | |||||||||||||| ||||||||||| |||   ||||||||||    
T  51205875 tttttaaatgagagagtgagaggatgaaactgtggcctttggattattgagatggctgtgatttaattctcacattagtaggtcacgtgaca 51205966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 33581179 - 33581133
Alignment:
Q  68 tttcaaataagaggagttttaaaatgagaggataagaggatgaaaca 114  Q
    |||||||| ||||||||||| |||||||||| | |||||||||||||    
T  33581179 tttcaaatgagaggagtttttaaatgagagggtgagaggatgaaaca 33581133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 28155 - 28241
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 149  Q
    |||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  28155 gggcatttcaaataagaggactttttaaatgagagggtgagaggatgaaacagtggccattagattagttagatggctgtgattaaa 28241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 28540414 - 28540327
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 150  Q
    ||||||||||||| |||||| ||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||| |||||||    
T  28540414 gggcatttcaaatgagaggacttttaaaatgagaggatgagagcatgaaatagtggccattggattaaatagatggctgtaattaaat 28540327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 37811173 - 37811256
Alignment:
Q  66 catttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 149  Q
    |||||||||| ||| || |||| |||||||||||| ||||||| ||| | |||||| ||||||||||||||| || ||||||||    
T  37811173 catttcaaatgagatgactttttaaatgagaggatgagaggataaaataatggccaatggattaattagatgtctatgattaaa 37811256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 16723684 - 16723728
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagagga 107  Q
    ||||||||||||| |||||| ||||||||||||||| | ||||||    
T  16723684 gggcatttcaaatgagaggacttttaaaatgagagggtgagagga 16723728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 54524732 - 54524648
Alignment:
Q  66 catttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 150  Q
    |||||||||| |||||| ||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||| ||| |||||||    
T  54524732 catttcaaatgagaggacttttaaaatgagaggatgagagcatgaaatagtggccattggattaaatagatggttgttattaaat 54524648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 54516963 - 54517058
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacat 158  Q
    ||||||||||||| ||||||||||| |||||||||| | ||||| |||||  |||||| |||||||| |||||||||||||||| ||||| |||||    
T  54516963 gggcatttcaaatgagaggagtttttaaatgagagggtgagagggtgaaattgtggcctttggattatttagatggctgtgatttaattcccacat 54517058  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 40934877 - 40934791
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 149  Q
    ||||||||||||||||||||  ||| |||||||||| | ||||||| ||||| |||||||||||||   || |||||||||||||||    
T  40934877 gggcatttcaaataagaggacattttaaatgagagggtgagaggattaaacaatggccattggattggatacatggctgtgattaaa 40934791  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 36244197 - 36244111
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaa 149  Q
    ||||||||||||| ||| || |||| |||||||||| | ||||||| ||||| || ||||||||||| ||| ||||||| |||||||    
T  36244197 gggcatttcaaatgagatgattttttaaatgagagggtgagaggattaaacattgaccattggattagttaaatggctgagattaaa 36244111  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 38019408 - 38019336
Alignment:
Q  102 agaggatgaaacagtggccattggattaattagatggctgtgattaaattctcacataagtgaatcacgtgac 174  Q
    |||||| |||||||||||||||||| || |||||||||||||||| ||||  | ||| ||||| |||||||||    
T  38019408 agaggaagaaacagtggccattggactagttagatggctgtgatttaatttactcatcagtgagtcacgtgac 38019336  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 20111947 - 20111906
Alignment:
Q  66 catttcaaataagaggagttttaaaatgagaggataagagga 107  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  20111947 catttcaaataagaggacttttaaaatgagaggatgagagga 20111906  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 38539793 - 38539871
Alignment:
Q  72 aaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 150  Q
    |||| |||||| ||||||||||||||||| |||| |||||| |||| |||||||||||| ||||||| ||| |||||||    
T  38539793 aaatgagaggacttttaaaatgagaggatgagagcatgaaatagtgaccattggattaaatagatggttgttattaaat 38539871  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 38540043 - 38539982
Alignment:
Q  89 aaatgagaggataagaggatgaaacagtggccattggattaattagatggctgtgattaaat 150  Q
    |||||||||||| | || |||||| ||||||||||| ||||| ||||||||||| |||||||    
T  38540043 aaatgagaggatgaaagcatgaaatagtggccattgaattaaatagatggctgttattaaat 38539982  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 33574073 - 33573985
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagaggatgaaacagtggccattggatt-aattagatggctgtgattaaat 150  Q
    |||||| |||| | |||||| ||||||||||||||| | ||||||||||| | || || || |||| ||||||||||||||||||||||    
T  33574073 gggcatatcaagtgagaggacttttaaaatgagagggtgagaggatgaaataatgacccttagattaaattagatggctgtgattaaat 33573985  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 35424267 - 35424311
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagagga 107  Q
    ||||||||||||| |||||| ||||||||||||||| | ||||||    
T  35424267 gggcatttcaaatgagaggacttttaaaatgagagggtgagagga 35424311  T

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Target: scaffold1370 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 203 - 247
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagagga 107  Q
    ||||||||||||| |||||| |||| |||||||||||| ||||||    
T  203 gggcatttcaaatgagaggactttttaaatgagaggatgagagga 247  T

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Target: scaffold0285 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 17586 - 17542
Alignment:
Q  63 gggcatttcaaataagaggagttttaaaatgagaggataagagga 107  Q
    ||||||||||||| |||||| |||| |||||||||||| ||||||    
T  17586 gggcatttcaaatgagaggattttttaaatgagaggatgagagga 17542  T

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