View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16149_high_36 (Length: 242)

Name: NF16149_high_36
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16149_high_36
NF16149_high_36
[»] chr7 (1 HSPs)
chr7 (1-226)||(6572678-6572903)
[»] chr3 (20 HSPs)
chr3 (1-226)||(8471985-8472210)
chr3 (38-226)||(6838281-6838469)
chr3 (1-226)||(8568328-8568553)
chr3 (1-217)||(4388326-4388542)
chr3 (29-216)||(5268508-5268695)
chr3 (1-216)||(5250593-5250808)
chr3 (5-100)||(6519668-6519763)
chr3 (5-100)||(6553944-6554039)
chr3 (7-100)||(6947699-6947792)
chr3 (40-220)||(5299194-5299374)
chr3 (5-96)||(6736418-6736509)
chr3 (1-100)||(6448288-6448387)
chr3 (5-100)||(8455082-8455177)
chr3 (5-100)||(6479488-6479583)
chr3 (1-100)||(6721569-6721668)
chr3 (5-100)||(8590157-8590252)
chr3 (1-100)||(13270094-13270193)
chr3 (1-190)||(6259606-6259795)
chr3 (1-100)||(5281108-5281207)
chr3 (1-191)||(6900540-6900730)
[»] scaffold0425 (1 HSPs)
scaffold0425 (5-100)||(6983-7078)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6572903 - 6572678
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6572903 ccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 6572804  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatg 200  Q
     |||||||||| ||| | ||||| |||| ||| ||||||| ||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||  |    
T  6572803 attgatacttggttgtcgttgtctttgtatgaaagcaaatggttgattatttcttctttctcaccctctctaccatatatgcaagatttatccaccagag 6572704  T
Q  201 atgcagttggcaatctttttgaggat 226  Q
    ||||||||||| ||||||||||||||    
T  6572703 atgcagttggcgatctttttgaggat 6572678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8471985 - 8472210
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||     
T  8471985 ccaaactttaagttcaaactgcttgtccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccaggcaaacccactatgctgata 8472084  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatg 200  Q
    ||||||||||| ||||||||||| ||||  || |||||||| |||||||  |||||||||| ||| |||||||||  |||| ||||||||||||| || |    
T  8472085 gttgatacttggttgccattgtcgttgtaagaaagcaaatacttgattaattcttctttgtcaccttctctaccacgtatggaagattcatccactaaag 8472184  T
Q  201 atgcagttggcaatctttttgaggat 226  Q
    ||||||||||| ||||||| ||||||    
T  8472185 atgcagttggcgatcttttcgaggat 8472210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 226
Target Start/End: Complemental strand, 6838469 - 6838281
Alignment:
Q  38 tcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacagca 137  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||  |||||||    
T  6838469 tcattgtagacaagctgagcaagggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtaagacagca 6838370  T
Q  138 aatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggcaatctttttgaggat 226  Q
    ||||||| ||||| |||||||| | ||| |||||||||  |||| |||||||||||||||| |||||||||||  ||||||||||||||    
T  6838369 aatagttaattatttcttctttttcaccttctctaccacgtatggaagattcatccaccaaagatgcagttggagatctttttgaggat 6838281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8568553 - 8568328
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||||||||||||| |||||||| ||| | |||||||||||||||||| |||||||||||||||| ||||||||||| | |||||| || || |||    
T  8568553 ccaagctttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatcccacctagacccacaatacttatt 8568454  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatg 200  Q
          || || ||||||   || |||||| | |||||||| |||||||| |  | ||| | | | |||||||||||||||||||||||||||||||| |    
T  8568453 acgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatatgcaagattcatccaccaaag 8568354  T
Q  201 atgcagttggcaatctttttgaggat 226  Q
    | ||||||||||||||||||||||||    
T  8568353 acgcagttggcaatctttttgaggat 8568328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4388542 - 4388326
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||||||||||||||||||  | ||||||  |||||||||| ||||| |||||||| |||||||| ||||| ||||| | ||||||||||||||||    
T  4388542 ccaagctttaagttcaaaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt 4388443  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatg 200  Q
     ||| |||||| |||||  ||||  |||| ||||| ||| |||||| || ||| ||||||| ||| | ||||||||||||||  ||| |||||||||| |    
T  4388442 attggtacttggttgccgctgtctatgtcagacagtaaaaagttgactaactcctctttgtcaccgtttctaccatatatgctcgatccatccaccaaag 4388343  T
Q  201 atgcagttggcaatctt 217  Q
    ||| |||||| ||||||    
T  4388342 atgtagttggaaatctt 4388326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 5268508 - 5268695
Alignment:
Q  29 atcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgt 128  Q
    ||||| ||||||||||| || |||||||||||||||||||| ||||| ||||| | |||||||||||||||| ||| ||| || ||||| |||||  |||    
T  5268508 atcctttggtcattgtacacgagttgagcaagggtggtcttacccattccaccgagacccactatgctgattattggtacatggttgcccttgtctatgt 5268607  T
Q  129 ctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggcaatct 216  Q
    | ||||| ||| | ||||||| ||| || |||| ||| ||||||||||||||||  |||||||||||||| |||| ||||||||||||    
T  5268608 cagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctggattcatccaccaaagatgtagttggcaatct 5268695  T

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Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 5250593 - 5250808
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||||||||| || |||||| ||||| |||||  |||| |||||||| |||||||| ||||| ||||| | ||||||||||||||||    
T  5250593 ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt 5250692  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatg 200  Q
     ||| ||| || |||||| |||   |||| ||||| ||| | |  |||| ||| || |||| ||| ||||||||||||||||  |||||||||||||| |    
T  5250693 attggtacatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccatctctaccatatatgctcgattcatccaccaaag 5250792  T
Q  201 atgcagttggcaatct 216  Q
     || |||||| |||||    
T  5250793 ctgtagttggaaatct 5250808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 6519763 - 6519668
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||||||||   || | | ||||||||||||| |||||||||||||||| || ||||| || || ||||||||||||||||||    
T  6519763 gctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgttgagcaagggtggttttacccattcctcctaaacccactatgctgatt 6519668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 6554039 - 6553944
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||||||||  ||| | | ||| ||||| ||||| | |||||||||||| ||||||||||| || ||||||||||||||||||    
T  6554039 gctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgatt 6553944  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 6947699 - 6947792
Alignment:
Q  7 tttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||| |||||||||| ||| ||| | | ||||||||| ||||| | |||||||||||| ||||||||||| || ||||||||||||||||||    
T  6947699 tttaaggtcaaaatgctcctctatcttgttgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgatt 6947792  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 5299194 - 5299374
Alignment:
Q  40 attgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacagcaaa 139  Q
    |||||| |||||||||||||||||||| || ||||| ||||| | |||||||||||||||| ||| |||  | | ||||   ||  |||| || || |||    
T  5299194 attgtacacaagttgagcaagggtggtttttcccattccacctagacccactatgctgattattggtacacggtcgccagcatctatgtcggaaagtaaa 5299293  T
Q  140 tagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggcaatcttttt 220  Q
     | ||| |||  || ||||||| ||| ||||| ||||||||||  |||||||||||||| |||| | ||||||||||||||    
T  5299294 aatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatcttttt 5299374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 6736418 - 6736509
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgct 96  Q
    ||||||||||||||||||||||  ||| | | ||| ||||| ||||| | |||||||||||| ||||||||||| || ||||||||||||||    
T  6736418 gctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgct 6736509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6448387 - 6448288
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||| ||||||||||||||||| ||  ||| | | || |||||| ||||| | |||||  |||||||| ||||||||||||| ||||||||||||||||    
T  6448387 ccaagatttaagttcaaaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatcccacccagacccactatgctgatt 6448288  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 8455082 - 8455177
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||||| ||  ||| | | ||||||||| ||||| | |||||||||||| || |||||||| || ||||| ||||||||||||    
T  8455082 gctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccctcctaaaccgactatgctgatt 8455177  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 6479583 - 6479488
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||| | ||| ||| | | ||  ||||| ||||| | |||||||||||| ||||||||||| || ||||| ||||||||||||    
T  6479583 gctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccaactatgctgatt 6479488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6721668 - 6721569
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||||||||||| | |||| | | ||||| ||||||||||| ||||| || |||||||| ||||| || ||||||  || ||||||||| ||||||    
T  6721668 ccaagctttaagttcatattgctccactatcctgtggtcattgtaaacaagctgggcaagggttgtcttacctatcccaatcagacccactatactgatt 6721569  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 8590157 - 8590252
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||| ||||||||||  || ||| | | ||| ||||| ||||| | |||||||||||| ||||||||||| || ||||| ||||||||||||    
T  8590157 gctttaagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgatt 8590252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 13270193 - 13270094
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||| |||||| |||| ||  ||||| ||||||||||| ||||| ||||||||||  ||||| ||||||||   || ||||||||| ||||||    
T  13270193 ccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaagggctgtcttacccatccccatcagacccactatactgatt 13270094  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 6259606 - 6259795
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||| |||||| |||| ||  ||||| ||||||||||| ||||| || |||||||  ||||| ||||||||   || ||||||||| ||||||    
T  6259606 ccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttacccatccccgtcagacccactatactgatt 6259705  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattca 190  Q
     | ||||| || || |  ||||   ||||||| || ||| | |||||||| || ||||| | ||  |||||||||||||||  |||||||    
T  6259706 atggatacctggtttcggttgtaactgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatgatagattca 6259795  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5281108 - 5281207
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||||| ||||||||||||  |  || || | ||| || || ||||| | ||||||||||||||| |||||||||||  ||||||||||| |||||    
T  5281108 ccaagctttatgttcaaaatgctctttaattctatcgtcgttatacacaagctcagcaagggtggtcttacccatcccaccagaacccactatggtgatt 5281207  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 6900540 - 6900730
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||| ||||||||||| | | ||| | | ||||| ||| ||||| || || ||||| ||||| |||||||||  || ||||||||  ||||||    
T  6900540 ccaagctttaatttcaaaatgctccacgatcatgtcgtcatagtaaacaagctgggcgagggttgtcttacccatcccaatcacacccactacactgatt 6900639  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcat 191  Q
     | | |||||| |||| | ||||  |||| || || ||||||| |||||| || | ||| | |  ||||||| |||||||| |||||||||    
T  6900640 atgggtacttggttgcgactgtcactgtcggaaagtaaatagtcgattatttcgtatttctcaagctctctatcatatatgaaagattcat 6900730  T

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Target: scaffold0425 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 7078 - 6983
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||||||||  ||| | | ||| ||||| ||||| | |||||||||||| ||||||||||| || ||||||||||||||||||    
T  7078 gctttaagttcaaaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgatt 6983  T

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