View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_high_40 (Length: 224)
Name: NF16149_high_40
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 16024098 - 16023902
Alignment:
| Q |
14 |
cagagagggtgatggaaacgagtttagccacaaaggagttgagattattggtagattcggagcgtaggaaatggagaagctgttgttgtgtcggtcccac |
113 |
Q |
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| T |
16024098 |
cagagagggttatggaaacgagtttagccacaaaggagttgagattattggtagattcggagcggaggaagtggagaagctgttgttgtgtcggtccctc |
16023999 |
T |
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| Q |
114 |
ggatccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaacacgatgttattgtctgattgttttgaaaagagttgtttgacgatg |
210 |
Q |
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| T |
16023998 |
ggatccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaacatgatgttattgtctgattgttttgaaaagagatgtttgacgatg |
16023902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 5155346 - 5155253
Alignment:
| Q |
87 |
gagaagctgttgttgtgtcggtcccacggatccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaacacgatgttattgtct |
180 |
Q |
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| T |
5155346 |
gagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttgtct |
5155253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 46478316 - 46478252
Alignment:
| Q |
139 |
acaacttgaagtgatagcggagaaaacacgatgttattgtctgattgttttgaaaagagttgttt |
203 |
Q |
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| T |
46478316 |
acaacttggagtgaaagtggagaaaacacgatgttgttgtctgattctttggagaagagatgttt |
46478252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 4582491 - 4582644
Alignment:
| Q |
44 |
caaaggagttgagattattggtagattcggagcgtaggaaatggagaagctgttgttgtgtcggtcccacggatccagcagcgataaggctgagaacaac |
143 |
Q |
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| T |
4582491 |
caaaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaac |
4582590 |
T |
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| Q |
144 |
ttgaagtgatagcggagaaaacacgatgttattgtctgattgttttgaaaagag |
197 |
Q |
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| T |
4582591 |
ttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagag |
4582644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 20143638 - 20143496
Alignment:
| Q |
46 |
aaggagttgagattattggtagattcggagcgtaggaaatggagaagctgttgttgtgtcggtcccacggatccagcagcgataaggctgagaacaactt |
145 |
Q |
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| T |
20143638 |
aaggagttaagatgattggtggatttgaagcggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataaggctgagcacaattt |
20143539 |
T |
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| Q |
146 |
gaagtgatagcggagaaaacacgatgttattgtctgattgttt |
188 |
Q |
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| T |
20143538 |
ggagtgatagtggcgaaaacacgatgttcttgtctgattgttt |
20143496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 20169944 - 20170014
Alignment:
| Q |
118 |
ccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaacacgatgttattgtctgattgttt |
188 |
Q |
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| T |
20169944 |
ccagtagcaataaggctgagcacaatttgaagtgatagtggtgaaaacacgacgtttttgtctgattgttt |
20170014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 20154499 - 20154401
Alignment:
| Q |
90 |
aagctgttgttgtgtcggtcccacggatccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaacacgatgttattgtctgattgttt |
188 |
Q |
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| T |
20154499 |
aagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttgtctgattgttt |
20154401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 9677631 - 9677789
Alignment:
| Q |
46 |
aaggagttgagattattggtagattcggagcgtaggaaatggagaagctgttgttgtgtcggtcccacggatccagcagcgataaggctgagaacaactt |
145 |
Q |
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| T |
9677631 |
aaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgagaacaactt |
9677730 |
T |
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| Q |
146 |
gaagtgatagcggagaaaacacgatgttattgtctgattgttttgaaaagagttgtttg |
204 |
Q |
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| || || | || ||||| |||| ||| |||||||||| |||||| ||||| |||||| |
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| T |
9677731 |
ggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttg |
9677789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 35160596 - 35160478
Alignment:
| Q |
88 |
agaagctgttgttgtgtcggtcccacggatccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaacacgatgttattgtctgattgtt |
187 |
Q |
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||||||||||||||||| | ||| | || ||||||| ||| | |||||| |||||||| || || | || |||||||||||||| || ||||||| || |
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| T |
35160596 |
agaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctt |
35160497 |
T |
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| Q |
188 |
ttgaaaagagttgtttgac |
206 |
Q |
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| T |
35160496 |
tggagaagagatgtttgac |
35160478 |
T |
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