View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_high_41 (Length: 218)
Name: NF16149_high_41
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 43119801 - 43119647
Alignment:
| Q |
13 |
gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcatcaatgttttattcacgagtgtagatcatct |
112 |
Q |
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| T |
43119801 |
gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcataaatgttttattcacgagtgtagatcattt |
43119702 |
T |
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| Q |
113 |
ctattacttaataaaaatggcaatatcaattcttatag-tttcttgtgtataaat |
166 |
Q |
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| T |
43119701 |
ctattacttaataaaaatggcaatatcaattcttatagtttttttgtgtataaat |
43119647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 43119575 - 43119461
Alignment:
| Q |
13 |
gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcatcaatgttttattcacgagtgtagatcatct |
112 |
Q |
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| T |
43119575 |
gcagagagtgaaggagagttgaaagaagaggatttaggtctggtaggtgggcacgaccatcatcattcatcaatgttttattcacgagtgtagatcatct |
43119476 |
T |
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| Q |
113 |
ctattacttaataaa |
127 |
Q |
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| T |
43119475 |
ctattacttaataaa |
43119461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 43119298 - 43119259
Alignment:
| Q |
163 |
aaatatatgcatttatatcatgtatttactacaaaactat |
202 |
Q |
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| T |
43119298 |
aaatatatgcatttatatcatgtatttactacaaaactat |
43119259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 43119366 - 43119322
Alignment:
| Q |
125 |
aaaaatggcaatatcaattcttatag-tttcttgtgtataaatat |
168 |
Q |
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| T |
43119366 |
aaaaatggcaatatcaattcttatagtttttttgtgtataaatat |
43119322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 21917434 - 21917395
Alignment:
| Q |
163 |
aaatatatgcatttatatcatgtatttactacaaaactat |
202 |
Q |
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|||||| || |||||||||||||||||||||||||||||| |
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| T |
21917434 |
aaatatgtgtatttatatcatgtatttactacaaaactat |
21917395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 15069776 - 15069748
Alignment:
| Q |
173 |
atttatatcatgtatttactacaaaacta |
201 |
Q |
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| T |
15069776 |
atttatatcatgtatttactacaaaacta |
15069748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 3960856 - 3960888
Alignment:
| Q |
170 |
tgcatttatatcatgtatttactacaaaactat |
202 |
Q |
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| T |
3960856 |
tgcatttatatcatgtatttaccacaaaactat |
3960888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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