View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_high_6 (Length: 531)
Name: NF16149_high_6
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 72 - 515
Target Start/End: Complemental strand, 44734521 - 44734083
Alignment:
| Q |
72 |
ccatttaggaataaaatagatccctctcaatgtaaatgtgttaaaaggatagaaagaaagaatatgctaggtggggtcattcattactcattagtccnnn |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44734521 |
ccatttaggaataaaatagatccctctcaatgtaaatgtgttaaaaggatagaaagaaagaatatgctaggtggggtcatt----actcattagtccttt |
44734426 |
T |
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| Q |
172 |
nnnnnnnnngtgtgaaaagggtccttaagtcgtttgtgatggctttaaatagcagtggcattcccgcgacaacaacagtaccttgaacacaaacaaaaac |
271 |
Q |
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| T |
44734425 |
tttgtttttgtgtgaaaagggtccttaagtcgtttgtgatgactttaaatagcagtggcattcccgcgacaacaacagaaccttgaacacaaacaaaaac |
44734326 |
T |
|
| Q |
272 |
caaaagaaagagaaccaaattaaccttgttgtgt--cagttgaattttcaagtgttttaactaacttagtagtttgatttgatcatcaattagccaaaac |
369 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44734325 |
caaaagaaagagaaccaaattaaccttgttgtgtgtcagttgagttttcaagtgttttaactaacttagt---ttgatttgatcatcaattagccaaaac |
44734229 |
T |
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| Q |
370 |
gggtcttccactgtggatgcttggtttgggtgcggacctcttgtgggccgacatgaatcgtctccttgcctttctcttccaccagggggtgttggatgag |
469 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44734228 |
gggtcttccactttggatgcttggtttgggtgcggacctcttgtgggccgacatgaatcgtctccttgcctttctcttccaccagggggtgttggatgag |
44734129 |
T |
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| Q |
470 |
caatttttgcagcttcaacagcttcaagatcatacctcccctaact |
515 |
Q |
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| T |
44734128 |
caatttttgcagcttcaacagcttcaagatcacacctcccctaact |
44734083 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 2259650 - 2259724
Alignment:
| Q |
361 |
agccaaaacgggtcttccactgtggatgcttggtttgggtgcggacctcttgtgggccgacatgaatcgtctcct |
435 |
Q |
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||||||||||||||| || || ||| ||||||| |||||| ||||||||||||||||||||||||| || ||||| |
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| T |
2259650 |
agccaaaacgggtctccctctttggttgcttggattgggtccggacctcttgtgggccgacatgaaccgcctcct |
2259724 |
T |
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