View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16149_low_10 (Length: 443)

Name: NF16149_low_10
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16149_low_10
NF16149_low_10
[»] chr2 (6 HSPs)
chr2 (133-428)||(13016919-13017215)
chr2 (45-409)||(11272274-11272637)
chr2 (11-135)||(13015990-13016118)
chr2 (54-415)||(1479434-1479794)
chr2 (211-281)||(15316524-15316594)
chr2 (203-274)||(30995318-30995389)
[»] chr6 (5 HSPs)
chr6 (58-412)||(1034039-1034394)
chr6 (93-415)||(2920962-2921283)
chr6 (93-183)||(18246572-18246662)
chr6 (54-121)||(32548941-32549008)
chr6 (245-279)||(8407533-8407567)
[»] chr8 (7 HSPs)
chr8 (45-416)||(9936132-9936506)
chr8 (84-415)||(8273575-8273904)
chr8 (67-415)||(37269843-37270190)
chr8 (67-415)||(42940977-42941325)
chr8 (83-281)||(30503004-30503202)
chr8 (67-169)||(36404064-36404166)
chr8 (210-269)||(37484904-37484963)
[»] chr5 (2 HSPs)
chr5 (84-409)||(36988772-36989097)
chr5 (341-397)||(40296232-40296288)
[»] chr7 (2 HSPs)
chr7 (59-412)||(42460093-42460445)
chr7 (93-183)||(31234771-31234861)
[»] chr1 (5 HSPs)
chr1 (64-249)||(32774124-32774309)
chr1 (300-415)||(32774336-32774451)
chr1 (303-409)||(4641000-4641106)
chr1 (210-274)||(19586677-19586741)
chr1 (210-282)||(24722559-24722631)
[»] chr4 (7 HSPs)
chr4 (67-409)||(2281985-2282328)
chr4 (93-183)||(16989575-16989665)
chr4 (207-281)||(4913493-4913567)
chr4 (207-281)||(43441460-43441534)
chr4 (207-281)||(22904704-22904778)
chr4 (207-281)||(22956372-22956446)
chr4 (84-145)||(4913370-4913431)
[»] chr3 (4 HSPs)
chr3 (45-145)||(53553627-53553728)
chr3 (93-183)||(1259319-1259409)
chr3 (93-183)||(37242607-37242697)
chr3 (210-281)||(51042152-51042223)
[»] scaffold0760 (1 HSPs)
scaffold0760 (67-160)||(1722-1815)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 133 - 428
Target Start/End: Original strand, 13016919 - 13017215
Alignment:
Q  133 ttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttc 232  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13016919 ttaatctactcaacgtccaaacccaagaaaccacttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttc 13017018  T
Q  233 catccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaac 332  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13017019 catccaaatcgaccaaattgtcgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaac 13017118  T
Q  333 aagttatgtggagttatgaaattaatctcaaa-ccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaagttatgtaggatc 428  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13017119 aagttatgtggagttatgaaattaatctcaaagccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaagttatgtaggatc 13017215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 45 - 409
Target Start/End: Complemental strand, 11272637 - 11272274
Alignment:
Q  45 agcagatccaaaaacagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactca 144  Q
    ||||||||||||||||||  | |||||||||||||   ||||||||| ||| ||||||| |||||||| ||||| ||||| | ||||||||| |||||||    
T  11272637 agcagatccaaaaacagcgtcgttcatcttctatttgggcactctctaggaatccaagttcactcatagaagaggaaagaagctatctttaacctactca 11272538  T
Q  145 acgtccaaacccaagaaaccgcttttatctcatccactagttcctctacttccttcactttg-ttcttaaaaatcctagcatttctttccatccaaatcg 243  Q
    ||||||||||||||||||||||||| || |||| ||| | |||||| ||||||||  ||||| || || |||||||| |||||||||| | | ||||||     
T  11272537 acgtccaaacccaagaaaccgctttgatttcattcacaatttcctccacttcctt-tctttgattattgaaaatccttgcatttcttt-ctttcaaatca 11272440  T
Q  244 accaaattgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtgg 343  Q
    ||||||||||||||||||||||||||||||| || |||||| |  | |||||    |||||| |||||||||||||||||||  |||| ||||||||||     
T  11272439 accaaattgttgcatgccaaatcaaccaaaaccccttcttaagtatcttagatttaacttcattattccaacattcaaattgcacaaataagttatgtgt 11272340  T
Q  344 agttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatg 409  Q
    | | || |||| |||||||| ||||||||| || | ||||||||||||||||||||||||||||||    
T  11272339 aatgataaaatgaatctcaagccaattcaagatacaacgccaaattaaagaggaaacatcacaatg 11272274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 13015990 - 13016118
Alignment:
Q  11 cacagaggggcccgagatcaacacaaaccccttaa----gcagatccaaaaacagcaccattcatcttctattaaagcactctctcggattccaagtcca 106  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13015990 cacagaggggcccgagatcaacacaaaccccttaattaagcagatccaaaaacagcaccattcatcttctattaaggcactctctcggattccaagtcca 13016089  T
Q  107 ctcataaaagagaaaagaggttatcttta 135  Q
    |||||||||||||||||||||||||||||    
T  13016090 ctcataaaagagaaaagaggttatcttta 13016118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 54 - 415
Target Start/End: Original strand, 1479434 - 1479794
Alignment:
Q  54 aaaaacagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaa 153  Q
    |||||||||||  |||||||| |||| | |||||||   |||||||||||||||||||||||||| || || | ||||||||||||||||| |||||||     
T  1479434 aaaaacagcacatttcatcttttatttaggcactcta--ggattccaagtccactcataaaagaggaacgatgctatctttaatctactcagcgtccaat 1479531  T
Q  154 cccaagaaaccgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgt 253  Q
    |||| ||||||||||| ||||| || ||||  || || || |||||| |||||||  | |||||||| |||||||||||| ||||| || ||||||| ||    
T  1479532 cccacgaaaccgctttgatctcgtcaactacctcttccacctccttctctttgttggtgaaaatccttgcatttctttccttccaagtcaaccaaatggt 1479631  T
Q  254 tgcatgccaaatcaac-caaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaa 352  Q
     |||  ||||||||||  ||||||||||| | || |||||||||| | | ||| ||| |||||| ||||||||  ||  ||| ||||| ||||| || ||    
T  1479632 ggcacaccaaatcaacaaaaaaacctttcctttgtcttttagagaccgcctcattataccaacactcaaattgcacatccaaattatgaggagtaataaa 1479731  T
Q  353 attaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 415  Q
    ||||||| ||| |||||| |||||     |||||||||||||||| ||||||||||| |||||    
T  1479732 attaatcccaagccaatttaaaataaggtgccaaattaaagaggagacatcacaatgtaagaa 1479794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 15316594 - 15316524
Alignment:
Q  211 taaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc 281  Q
    |||||||||| ||||| |||||| ||||||||  ||||||||  || |||||||||||| |||||||||||    
T  15316594 taaaaatcctcgcattcctttccctccaaatcatccaaattgccgcgtgccaaatcaactaaaaacctttc 15316524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 30995389 - 30995318
Alignment:
Q  203 tttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaa 274  Q
    |||||| |||||||||| |||||| || ||| ||||||||  |||||| | ||| |||||||||||||||||    
T  30995389 tttgtttttaaaaatccgagcattcctctccttccaaatcatccaaatagatgcgtgccaaatcaaccaaaa 30995318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 7e-90; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 58 - 412
Target Start/End: Complemental strand, 1034394 - 1034039
Alignment:
Q  58 acagcaccattcatcttc-tattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaaccc 156  Q
    |||||||| ||||||| | |||| | ||||||| | |||||||||||||||||||||||||| || || | |||||||||||||||||||||||||||||    
T  1034394 acagcacctttcatctccctatttaggcactctttaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaacgtccaaaccc 1034295  T
Q  157 aagaaaccgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgc 256  Q
    ||||||||||||| |||||||||||||  ||  | || |||||| ||||||| ||||||||||| |||||||||||| |||||||| |||||||||| ||    
T  1034294 aagaaaccgctttaatctcatccactatctcaccaacctccttcgctttgttattaaaaatccttgcatttctttccttccaaatcaaccaaattgtcgc 1034195  T
Q  257 atgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaatta 356  Q
     ||||||||||||||||||||||||||||| || ||||| | ||| ||| || ||||||||||||||||| |   ||||||||||||||| || || |||    
T  1034194 gtgccaaatcaaccaaaaacctttcttatgtctcttagaaaccacctcattactccaacattcaaattgtacggccaagttatgtggagtaataaagtta 1034095  T
Q  357 atctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaa 412  Q
    | | ||| | |||| |||||||||||||||||||| ||||| ||||||||||||||    
T  1034094 accccaagctaatttaaaattccacgccaaattaaggaggagacatcacaatgcaa 1034039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 93 - 415
Target Start/End: Original strand, 2920962 - 2921283
Alignment:
Q  93 ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccactagttcctcta 192  Q
    |||||||| ||||||||||||||||| ||||| | ||||||||| ||||||||| |||||||||||||||  ||||| || || ||||| | |||||| |    
T  2920962 ggattccatgtccactcataaaagaggaaagaagctatctttaacctactcaacatccaaacccaagaaagtgctttaatatcgtccacaatttcctcca 2921061  T
Q  193 cttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttcttatgcctttt 292  Q
    | ||||||  || ||| || || ||||| || ||||||||| |||||||||||||||| || |  |||||||||||||||||| | ||||||||||| ||    
T  2921062 catccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagtagtgtgccaaatcaaccaaaaatccttcttatgcctctt 2921161  T
Q  293 agagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaa 392  Q
     ||   || ||||| |||||||||  |||| || |||||||||||||| ||||| || || |||||| | | |||||||||||| | |||||| |||||     
T  2921162 cgattcca-ttcaccattccaacaaacaaaatgagcaaacaagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaag 2921260  T
Q  393 gaggaaacatcacaatgcaagaa 415  Q
     |||||||||||||||| |||||    
T  2921261 aaggaaacatcacaatgtaagaa 2921283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 18246572 - 18246662
Alignment:
Q  93 ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta 183  Q
    |||||||| ||||||||||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||| |||||| || |||| |||||    
T  18246572 ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta 18246662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 32549008 - 32548941
Alignment:
Q  54 aaaaacagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaa 121  Q
    |||||||||||| ||||||||||||| |  || | ||| |||||| ||||||||| ||||||||||||    
T  32549008 aaaaacagcacccttcatcttctatttagacattatctaggattctaagtccacttataaaagagaaa 32548941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 8407567 - 8407533
Alignment:
Q  245 ccaaattgttgcatgccaaatcaaccaaaaacctt 279  Q
    |||||||||||| ||||||||||||||||||||||    
T  8407567 ccaaattgttgcgtgccaaatcaaccaaaaacctt 8407533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 45 - 416
Target Start/End: Complemental strand, 9936506 - 9936132
Alignment:
Q  45 agcagatccaaaaa---cagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctac 141  Q
    ||||||||||||||   ||||||| ||||||||||||| | ||||| ||| || ||||||||||||||||||||||| || || | |||||||| ||| |    
T  9936506 agcagatccaaaaaagccagcacctttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaacgatgctatctttagtctgc 9936407  T
Q  142 tcaacgtccaaacccaagaaaccgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaat 241  Q
    ||||| |||| |||||||| |||||||  |||||||||||||  ||| | || |||||| ||||||  || |||||||  ||||||||||||||||||||    
T  9936406 tcaacatccacacccaagacaccgcttcaatctcatccactaactccccaacatccttctctttgtgattgaaaatccgtgcatttctttccatccaaat 9936307  T
Q  242 cgaccaaattgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgt 341  Q
    | ||||||| || ||||||||||||||| ||||||||||| || ||||| | |||| ||| ||| |||||||||| ||||| || |||||||| |||||     
T  9936306 caaccaaatagtggcatgccaaatcaacaaaaaacctttcctaagccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatga 9936207  T
Q  342 ggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaag 416  Q
    || || || ||||| ||| | | |||||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  9936206 ggggtaataaaattcatcccgagccaatttaaaataccacgccaaattaaagaggagacatcacaatgcaagaag 9936132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 84 - 415
Target Start/End: Complemental strand, 8273904 - 8273575
Alignment:
Q  84 cactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta 183  Q
    |||||||| ||||||||| |||||||||||||||| ||||| | ||||||||||||||||  ||||||||||||||||||||| || |||||||||||||    
T  8273904 cactctctaggattccaaatccactcataaaagaggaaagaagctatctttaatctactcgtcgtccaaacccaagaaaccgccttaatctcatccacta 8273805  T
Q  184 gttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttctt 283  Q
      ||||| ||||| |||| ||  || ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| || || ||    
T  8273804 actcctccacttctttcatttgattgttaaaaatccttgcatttctttccttccaaatcgaccaaattgtcgcatgccaaatcaaccaaaaccccttttt 8273705  T
Q  284 atgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgc 383  Q
    | ||||||| ||| | || ||||||||||||||  | ||   |||| | || |  |||||||| || ||||| |||||||||||||||||||| |||||     
T  8273704 aagccttttggagggaacctcactattccaacaacccaa--atgcacaaaaatcgtgtggagtaataaaattgatctcaaaccaattcaaaataccacgt 8273607  T
Q  384 caaattaaagaggaaacatcacaatgcaagaa 415  Q
    |||||||| ||||  |||||| ||||||||||    
T  8273606 caaattaacgaggtcacatcaaaatgcaagaa 8273575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 67 - 415
Target Start/End: Original strand, 37269843 - 37270190
Alignment:
Q  67 ttcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgc 166  Q
    |||||||||||||||  || ||||| |||||||||||||||||||||||||| || || | |||||| | ||||||||||  ||||| |||||| |   |    
T  37269843 ttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataac 37269942  T
Q  167 ttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatc 266  Q
    ||| || || ||||| |  || || || |||||| |||  |||||||||||||| ||||||||| || ||||||||| ||||||||||||||||||||||    
T  37269943 tttgatttcctccacaatctcatccacatccttcgcttgattcttaaaaatcctcgcatttctt-ccttccaaatcgtccaaattgttgcatgccaaatc 37270041  T
Q  267 aaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaacc 366  Q
    | |||||  ||||| ||  | ||||| ||   ||| |||||||||||||| ||||||||  |||||| |||||| |||||||  |||||||| || | ||    
T  37270042 atccaaaccccttttttgagtcttttggaactcacctcactattccaacaatcaaattgcacaaacaggttatgcggagttacaaaattaatgtctagcc 37270141  T
Q  367 aattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 415  Q
    ||||||||| |||||||||||| ||  | || |||||||||||||||||    
T  37270142 aattcaaaactccacgccaaatcaactaagacacatcacaatgcaagaa 37270190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 67 - 415
Target Start/End: Complemental strand, 42941325 - 42940977
Alignment:
Q  67 ttcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgc 166  Q
    ||||||||||||||   || ||||| |||||||||||||||||||||||||| || || | |||||||| ||||||||||  || || |||||| |   |    
T  42941325 ttcatcttctattacgacattctctaggattccaagtccactcataaaagaggaaggaagctatctttagtctactcaacaccccaaaccaagataaaac 42941226  T
Q  167 ttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatc 266  Q
    ||| || || ||||| |  || || || |||||| |||  |||||||||||||| |||||| ||||| ||||||||| ||||||||||||||| ||||||    
T  42941225 tttgatttcctccacaatctcatccacatccttcgcttgattcttaaaaatcctcgcatttttttccttccaaatcgtccaaattgttgcatgtcaaatc 42941126  T
Q  267 aaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaacc 366  Q
    | |||||  ||||| ||  | ||||| ||   ||| |||||||||||||| ||||||||  |||||| |||||| |||||||  |||||||| || | ||    
T  42941125 atccaaaccccttttttgagtcttttggaactcacctcactattccaacaatcaaattgcacaaacaggttatgcggagttacaaaattaatgtctagcc 42941026  T
Q  367 aattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 415  Q
    ||||||||| |||||||||||  || || || |||||||||||||||||    
T  42941025 aattcaaaactccacgccaaagcaacgaagacacatcacaatgcaagaa 42940977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 281
Target Start/End: Original strand, 30503004 - 30503202
Alignment:
Q  83 gcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccact 182  Q
    |||||||||||||||||||  |||||| || |||||  |||| | |||| | ||||||||||||| ||||  ||||||   |||||| || || ||||||    
T  30503004 gcactctctcggattccaacaccactcgtagaagaggtaagaagctatcctcaatctactcaacgaccaacaccaagatgtcgctttaatgtcttccact 30503103  T
Q  183 agttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc 281  Q
    |  || || |  |  || | || ||||||||| ||||| ||||| |||||| ||||||||  |||||| |||||||| ||||||||||||||| |||||    
T  30503104 atctcatcgaagtttttgaattggttcttaaagatcctcgcattcctttccttccaaatcatccaaatagttgcatgtcaaatcaaccaaaaagctttc 30503202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 36404064 - 36404166
Alignment:
Q  67 ttcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgc 166  Q
    ||||||||||||| || || ||||| ||||||||||||||||| || ||||| || || | |||||| | ||||||||||| ||||| |||||| ||| |    
T  36404064 ttcatcttctatttaaacattctctaggattccaagtccactcgtagaagaggaaggaagctatcttaagtctactcaacgcccaaaaccaagataccac 36404163  T
Q  167 ttt 169  Q
    |||    
T  36404164 ttt 36404166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 37484904 - 37484963
Alignment:
Q  210 ttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaac 269  Q
    ||||||||||||||||| |||||| ||||||| |||||||| |   ||||||||||||||    
T  37484904 ttaaaaatcctagcattcctttccttccaaattgaccaaatcgccacatgccaaatcaac 37484963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 84 - 409
Target Start/End: Complemental strand, 36989097 - 36988772
Alignment:
Q  84 cactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta 183  Q
    |||||||| |||||||| ||||||| ||| ||||| ||||| | |||||| || |||||||||  ||||||||||||||||||||| || || | |||||    
T  36989097 cactctctaggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgctttgatttcgttcacta 36988998  T
Q  184 gttcctctacttccttcactttg-ttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttct 282  Q
     |||||| || | |||| ||| | || ||||||||||| |||||||||||| |||||||| ||||||| || |||||||||||||||||||| ||||| |    
T  36988997 tttcctccacattcttc-cttagattattaaaaatcctcgcatttctttccttccaaatcaaccaaatagtagcatgccaaatcaaccaaaaccctttat 36988899  T
Q  283 tatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacg 382  Q
    || |||| || |  | |||||||||||||||||| ||||| ||  |||| | |||||||||||| || ||||||||||| |||||||||||||| |  ||    
T  36988898 taagcctcttcggcatcacttcactattccaacaatcaaaatggacaaaaaggttatgtggagtgataaaattaatctccaaccaattcaaaatccggcg 36988799  T
Q  383 ccaaattaaagaggaaacatcacaatg 409  Q
    |||||| |||||||||| |||||||||    
T  36988798 ccaaatcaaagaggaaatatcacaatg 36988772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 40296232 - 40296288
Alignment:
Q  341 tggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagagga 397  Q
    |||||| |||||||||||||||| ||||| ||| | | |||||||||||| ||||||    
T  40296232 tggagtaatgaaattaatctcaagccaatccaagacttcacgccaaattagagagga 40296288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 59 - 412
Target Start/End: Original strand, 42460093 - 42460445
Alignment:
Q  59 cagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaa 158  Q
    ||||||| ||||||||||||| | ||||||||| |||||||||||| ||||||||||||| || || | ||||||||  || ||||   |||| ||||||    
T  42460093 cagcacctttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaacgatgctatctttagcctgctcagtatccacacccaa 42460192  T
Q  159 gaaaccgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcat 258  Q
    || |||||||| |||||||||||||  ||| | || |||||| |||| |  || |||||||  |||||||||||| |||||||| ||||||| || ||||    
T  42460193 gacaccgctttaatctcatccactaactccccaacatccttctctttttgattgaaaatccgggcatttctttccttccaaatcaaccaaatagtggcat 42460292  T
Q  259 gccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaat 358  Q
    ||||||||||| ||||||||||| ||  |||| | |||| ||| ||| |||||||||| ||||| || |||||||| ||||| || || || ||||| ||    
T  42460293 gccaaatcaacaaaaaacctttcctaatccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaataaaattcat 42460392  T
Q  359 ctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaa 412  Q
      | | ||||||  |||| |||||||||||||||||||| | ||||||||||||    
T  42460393 tccgagccaatt-taaataccacgccaaattaaagaggagaaatcacaatgcaa 42460445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 31234771 - 31234861
Alignment:
Q  93 ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta 183  Q
    |||||||||||||||||||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||| |||||| || |||| |||||    
T  31234771 ggattccaagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta 31234861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 32774124 - 32774309
Alignment:
Q  64 ccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaac 163  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||    
T  32774124 ccattcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaac 32774223  T
Q  164 cgcttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaa 249  Q
    |||||| |||||||||||||  ||||| || ||||||  || ||| || || ||||| |||||||||||| |||||||| ||||||    
T  32774224 cgctttgatctcatccactaaatcctcaacctccttcgtttggttgttgaagatccttgcatttctttccttccaaatcaaccaaa 32774309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 32774336 - 32774451
Alignment:
Q  300 acttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaa 399  Q
    ||||| ||||||||||| || |||||   |||||||||||||||||| |  ||||||||||||| ||||||||| || |||||||||||||| ||||| |    
T  32774336 acttctctattccaacaatcgaattgcataaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaacgaggata 32774435  T
Q  400 catcacaatgcaagaa 415  Q
    |||||||||| |||||    
T  32774436 catcacaatgtaagaa 32774451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 409
Target Start/End: Original strand, 4641000 - 4641106
Alignment:
Q  303 tcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacat 402  Q
    |||| ||||||||||||||| ||  |||| || ||||| ||||| ||||| |||  ||||| ||||||||| ||| |||| |||||||||||||||||||    
T  4641000 tcaccattccaacattcaaaatgaacaaataaattatgaggagtaatgaagttagactcaagccaattcaagatttcacgtcaaattaaagaggaaacat 4641099  T
Q  403 cacaatg 409  Q
    |||||||    
T  4641100 cacaatg 4641106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 19586677 - 19586741
Alignment:
Q  210 ttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaa 274  Q
    ||||| ||||| |||||||||||| |||||||| ||||||| ||||| ||||||| |||||||||    
T  19586677 ttaaagatccttgcatttctttccttccaaatcaaccaaatcgttgcgtgccaaaccaaccaaaa 19586741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 24722631 - 24722559
Alignment:
Q  210 ttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttct 282  Q
    ||||||||||| | |||||||||| ||||||||  |||||| || |||||||||| ||||  |||| ||||||    
T  24722631 ttaaaaatcctcgaatttctttccttccaaatcatccaaatagtggcatgccaaaccaacataaaagctttct 24722559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 409
Target Start/End: Complemental strand, 2282328 - 2281985
Alignment:
Q  67 ttcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgc 166  Q
    ||||||||||||| | ||| || || || ||| ||||||| ||||| ||||| || || | | |||||||||||||||| | ||| ||||||||||||||    
T  2282328 ttcatcttctatttaggcattccctagggttctaagtccattcatagaagaggaacgatgctttctttaatctactcaatgaccacacccaagaaaccgc 2282229  T
Q  167 ttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatc 266  Q
    ||| |||||||||||||  |  || ||  |||||||||| || || ||||||||  |||| |||||  |||||||  ||||||||||  |||||||||||    
T  2282228 tttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttctttccaaattaaccaaattgtgacatgccaaatc 2282129  T
Q  267 aac-caaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaac 365  Q
    |||  ||||||||||| |||||||| || | |  || ||| ||||| |||| ||||||||  ||||||| ||||| ||||| || ||||| ||  | | |    
T  2282128 aacaaaaaaacctttcctatgccttctaaaaacaacctcattattctaacaatcaaattgcacaaacaaattatgaggagtgataaaattgattccgagc 2282029  T
Q  366 caattcaaaattccacgccaaattaaagaggaaacatcacaatg 409  Q
    ||||| ||||| | ||||||||||   ||||| |||||||||||    
T  2282028 caatttaaaatccgacgccaaatttgtgaggagacatcacaatg 2281985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 16989665 - 16989575
Alignment:
Q  93 ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta 183  Q
    |||||||| ||||||||||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||| |||||| || |||| |||||    
T  16989665 ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta 16989575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 4913493 - 4913567
Alignment:
Q  207 ttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc 281  Q
    |||||||||||||| |||||||||||| ||||||||  ||||||||  ||||||||||||| | ||||| |||||    
T  4913493 ttcttaaaaatcctcgcatttctttccttccaaatcatccaaattgaggcatgccaaatcatcaaaaaagctttc 4913567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 43441460 - 43441534
Alignment:
Q  207 ttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc 281  Q
    |||||||||||||| || ||||||||| ||||||||  ||||||||  ||||||||||||| | ||||| |||||    
T  43441460 ttcttaaaaatcctcgcgtttctttccttccaaatcatccaaattgaggcatgccaaatcatcaaaaaagctttc 43441534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 22904704 - 22904778
Alignment:
Q  207 ttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc 281  Q
    |||||||||||||| || ||||||||||||||||||  |||||| |  ||||| ||||||| | ||||| |||||    
T  22904704 ttcttaaaaatcctcgcgtttctttccatccaaatcatccaaatagaggcatgtcaaatcatcaaaaaagctttc 22904778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 22956372 - 22956446
Alignment:
Q  207 ttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc 281  Q
    |||||||||||||| || ||||||||||||||||||  |||||| |  ||||| ||||||| | ||||| |||||    
T  22956372 ttcttaaaaatcctcgcgtttctttccatccaaatcatccaaatagaggcatgtcaaatcatcaaaaaagctttc 22956446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 4913370 - 4913431
Alignment:
Q  84 cactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaa 145  Q
    ||||||||||||||||||  |||||| ||||||||| |||| | |||| | |||||||||||    
T  4913370 cactctctcggattccaacaccactcgtaaaagagacaagaagctatcctcaatctactcaa 4913431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 53553627 - 53553728
Alignment:
Q  45 agcagatccaaaaa-cagcaccattcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactc 143  Q
    |||||||||||||| |||| || ||||||| ||||| | ||||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  53553627 agcagatccaaaaaacagcgcctttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaagctatctttaatctactc 53553726  T
Q  144 aa 145  Q
    ||    
T  53553727 aa 53553728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 1259319 - 1259409
Alignment:
Q  93 ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta 183  Q
    |||||||| ||||||||||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||| |||||| || |||| |||||    
T  1259319 ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta 1259409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 37242607 - 37242697
Alignment:
Q  93 ggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaagaaaccgcttttatctcatccacta 183  Q
    |||||||| ||||||||||| ||||| ||||| | |||||| || ||||||||| ||||||||||||||| |||||| || |||| |||||    
T  37242607 ggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcacta 37242697  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 51042223 - 51042152
Alignment:
Q  210 ttaaaaatcctagcatttctttccatccaaatcgaccaaattgttgcatgccaaatcaaccaaaaacctttc 281  Q
    ||||| ||||| |||||||||||| ||||||||  |||||||| ||| |||||||||||||| || ||||||    
T  51042223 ttaaagatccttgcatttctttccttccaaatcatccaaattgatgcgtgccaaatcaaccacaaccctttc 51042152  T

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Target: scaffold0760 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 1722 - 1815
Alignment:
Q  67 ttcatcttctattaaagcactctctcggattccaagtccactcataaaagagaaaagaggttatctttaatctactcaacgtccaaacccaaga 160  Q
    |||||||||||||||  || ||||| |||||||||||||||||||||||||| || || | |||||| | ||||||||||  ||||| ||||||    
T  1722 ttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 1815  T

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