View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16149_low_11 (Length: 440)

Name: NF16149_low_11
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16149_low_11
NF16149_low_11
[»] chr7 (1 HSPs)
chr7 (36-391)||(5468450-5468805)
[»] chr5 (8 HSPs)
chr5 (212-317)||(33823144-33823249)
chr5 (212-298)||(33750178-33750264)
chr5 (212-317)||(33867306-33867411)
chr5 (212-332)||(33763708-33763828)
chr5 (212-322)||(33904850-33904960)
chr5 (212-308)||(33736438-33736534)
chr5 (224-317)||(33698932-33699025)
chr5 (212-333)||(33680386-33680507)
[»] scaffold0001 (1 HSPs)
scaffold0001 (212-313)||(149252-149353)
[»] scaffold0247 (1 HSPs)
scaffold0247 (212-308)||(19854-19950)
[»] scaffold0193 (1 HSPs)
scaffold0193 (212-308)||(23302-23398)
[»] scaffold0023 (1 HSPs)
scaffold0023 (212-332)||(88869-88989)
[»] chr8 (1 HSPs)
chr8 (222-333)||(21306326-21306437)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 36 - 391
Target Start/End: Complemental strand, 5468805 - 5468450
Alignment:
Q  36 ttatttgggctgttttggatataagcataatgctagcaaagttttatcaaaagaaataacattttaacaagacatgcagaaaagaaaattaaacatggtt 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5468805 ttatttgggctgttttggatataagcataatgctagcaaagttttatcaaaagaaataacattttaacaagacatgcagaaaagaaaattaaacatggtt 5468706  T
Q  136 aatttacatttggttctatatgtgtttaatttatatcatttggtagaagaagtggcattcaattcattatacctgaacctgctctttgaggaattaaatg 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5468705 aatttacatttggttctatatgtgtttaatttatatcatttggtagaagaagtggcattcaattcattatacctgaacctgctctttgaggaattaaatg 5468606  T
Q  236 ccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttcacacctatggtattatccatatcc 335  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5468605 ccattttccttcaccatacttgttaatgtaagccttgagtaagttgtcttcctcgtatgtccatgcaccttttttcacgcctatggtattatccatatcc 5468506  T
Q  336 atacccacacctttaatatcctcgtataccctttccttaatcaacttcatacacaa 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5468505 atacccacacctttaatatcctcgtataccctttccttaatcaacttcatatacaa 5468450  T

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Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 33823144 - 33823249
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 311  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| ||    
T  33823144 acctgttcttttgggaattaaatgccattttccttcaccatacttgtgaatgtaagccttgagtaagttgtcttcctcatatgtccatgcaccttttctc 33823243  T
Q  312 acacct 317  Q
    | ||||    
T  33823244 aaacct 33823249  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 33750178 - 33750264
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtcca 298  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||||||  |||||||    
T  33750178 acctgctcttttaggaattaaatgccattttccttcaccatacttgttaatataagctttgagtaacttgtcttcctcagatgtcca 33750264  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 33867306 - 33867411
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 311  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| |||||||||||||||||| ||    
T  33867306 acctgctctttgtggaactaaatgccattttccttcaccatacttctgcatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctc 33867405  T
Q  312 acacct 317  Q
    ||||||    
T  33867406 acacct 33867411  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 332
Target Start/End: Original strand, 33763708 - 33763828
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 311  Q
    ||||||||| || ||||  ||||||||||||||||||||||||||||||||| ||||||||||||   | |||||||| |||||||| |||||| |||||    
T  33763708 acctgctctctgtggaacaaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacctcttttc 33763807  T
Q  312 acacctatggtattatccata 332  Q
    ||  || | ||||||||||||    
T  33763808 actgctctcgtattatccata 33763828  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 33904850 - 33904960
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 311  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| |||||||||||||||||| ||    
T  33904850 acctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctc 33904949  T
Q  312 acacctatggt 322  Q
    || ||| ||||    
T  33904950 acgcctctggt 33904960  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 33736438 - 33736534
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 308  Q
    |||||||||||||| || ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| ||||||||||||||||||    
T  33736438 acctgctctttgagaaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt 33736534  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 317
Target Start/End: Original strand, 33698932 - 33699025
Alignment:
Q  224 aggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttcacacct 317  Q
    ||||| |||||||||||||||||||||||||||||  ||| ||||||||||||   | |||||||| |||||||||||||||||| ||| ||||    
T  33698932 aggaactaaatgccattttccttcaccatacttgtggatgcaagccttgagtagattatcttcctcatatgtccatgcaccttttctcaaacct 33699025  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 333
Target Start/End: Original strand, 33680386 - 33680507
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 311  Q
    ||||||||||| ||||| |||||||||||| ||||||||||| || | |||  |  |||||||||   |||| ||||| |||||||||||||||||| ||    
T  33680386 acctgctcttttaggaactaaatgccatttcccttcaccatatttttgaatacagtccttgagtagattgtcctcctcatatgtccatgcaccttttctc 33680485  T
Q  312 acacctatggtattatccatat 333  Q
    | |||| |||| || |||||||    
T  33680486 aaacctctggtcttttccatat 33680507  T

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Target: scaffold0001 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 149252 - 149353
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 311  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||   | ||||||||||||||||| ||||||||| ||    
T  149252 acctgctctttgaggaactaaatgccattttccttccccatacttgtcaatgcaagccttgagtagcttatcttcctcgtatgtccaggcaccttttctc 149351  T
Q  312 ac 313  Q
    ||    
T  149352 ac 149353  T

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Target: scaffold0247 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 19950 - 19854
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 308  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||||  |||||||||||||||  || ||||||| || ||||||||||||||||||    
T  19950 acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt 19854  T

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Target: scaffold0193 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 23398 - 23302
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 308  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||||  |||||||||||||||  || ||||||| || ||||||||||||||||||    
T  23398 acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt 23302  T

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Target: scaffold0023 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 332
Target Start/End: Complemental strand, 88989 - 88869
Alignment:
Q  212 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 311  Q
    |||||||||| |||||| || |||||||||||||| |||||||||||||||| | |||||||||||| | ||||| || |  ||||| | ||||||||||    
T  88989 acctgctcttcgaggaactagatgccattttccttgaccatacttgttaatgcatgccttgagtaagttatcttcttcattcgtccaggtaccttttttc 88890  T
Q  312 acacctatggtattatccata 332  Q
    || ||  ||||||||||||||    
T  88889 acgccactggtattatccata 88869  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 21306326 - 21306437
Alignment:
Q  222 tgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagct-gtcttcctcgtatgtccatgcaccttttttcacacctatg 320  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||| ||||||||||| ||||  ||||||| ||| |||||||| |||||| ||||||||  |    
T  21306326 tgaggaactaaattccattttccttcaccgtacgtgttaatgcaagccttgagt-agctcatcttccttgtaagtccatgcgccttttctcacacctccg 21306424  T
Q  321 gtattatccatat 333  Q
    ||||| |||||||    
T  21306425 gtattctccatat 21306437  T

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