View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_13 (Length: 429)
Name: NF16149_low_13
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 25885017 - 25884620
Alignment:
| Q |
17 |
caccattagttgtaactgttcttacctttgcaactgcaacttttcttggatttcctttgaattctggcactgttttcacgataacttcgattatcaagat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885017 |
caccattagttgtaactgttcttacctttgcaactgcaacttttcttggatttcctttgaattctggcactgttttcacgataacttcgattatcaagat |
25884918 |
T |
|
| Q |
117 |
acttcaagagcctttgaggacttttcctcaggctcttatcatgatttctcaagcaacaatatctttagggaggttggatgagttcatgacgagtaaggaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884917 |
acttcaagagcctttgaggacttttcctcaggctcttatcatgatttctcaagcaacaatatctttagggaggttggatgagttcatgacgagtaaggaa |
25884818 |
T |
|
| Q |
217 |
atggatgagaatgcagtgcaacgagaggagaattgtgatggtgatgtagctgtggagataaaagatgggaaattctcatgggatgataacgatgagaacg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884817 |
atggatgagaatgcagtgcaacgagaggagaattgtgatggtgatgtagctgtggagataaaagatgggaaattctcatgggatgataacgatgagaacg |
25884718 |
T |
|
| Q |
317 |
acgctctgagagttgaagagttggtaattaagaaaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884717 |
acgctctgagagttgaagagttggtaattaagaaaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtg |
25884620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 14320333 - 14319938
Alignment:
| Q |
19 |
ccattagttgtaactgttcttacctttgcaactgcaacttttcttggatttcctttgaattctggcactgttttcacgataacttcgattatcaagatac |
118 |
Q |
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||||||| |||||||||||||||||||| |||| ||||||| ||||| ||||||||||| | |||||||| || || |||||||||||||||||||| | |
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| T |
14320333 |
ccattagctgtaactgttcttacctttggaacttcaactttaattggaattcctttgaatgccggcactgtatttacaataacttcgattatcaagattc |
14320234 |
T |
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| Q |
119 |
ttcaagagcctttgaggacttttcctcaggctcttatcatgatttctcaagcaacaatatctttagggaggttggatgagttcatgacgagtaaggaaat |
218 |
Q |
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||||||||||| |||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14320233 |
ttcaagagcctgtgaggactttcccgcaagctcttataatgatttctcaagcaacaatatctttagggaggttggatgagttcatggtgagtaaggaaat |
14320134 |
T |
|
| Q |
219 |
ggatgagaatgcagtgcaacgagaggagaattgtgatggtgatgtagctgtggagataaaagatgggaaattctcatgggatgataacgatgagaacgac |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || |
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| T |
14320133 |
ggatgagaatgcagtgcaaagagaggagaattgtgatggtgatgtagccgtggagataaaagatgggaaattttcatgggatgataaggatgagaatgag |
14320034 |
T |
|
| Q |
319 |
gctctgagagttgaagagttggtaattaagaaaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtg |
414 |
Q |
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|| ||| ||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14320033 |
gcgttgacagtggaagagttggtaattaagaaaggggaccgtgctgctattgtaggaactgttggttcaggcaagtcttcattattggcttctgtg |
14319938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 27 - 414
Target Start/End: Complemental strand, 14282176 - 14281789
Alignment:
| Q |
27 |
tgtaactgttcttacctttgcaactgcaacttttcttggatttcctttgaattctggcactgttttcacgataacttcgattatcaagatacttcaagag |
126 |
Q |
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|||| ||||||||||||||| ||||||||||||| | ||| ||||||||| | ||||| ||||| || |||||||||||||||||||| ||||||||| |
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| T |
14282176 |
tgtagctgttcttacctttggaactgcaacttttataggaactcctttgaaggccggcacagtttttacaataacttcgattatcaagattcttcaagag |
14282077 |
T |
|
| Q |
127 |
cctttgaggacttttcctcaggctcttatcatgatttctcaagcaacaatatctttagggaggttggatgagttcatgacgagtaaggaaatggatgaga |
226 |
Q |
| |
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||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
14282076 |
cctctgaggactttccctcaggctcttatcaatatttctcaagcaactatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgata |
14281977 |
T |
|
| Q |
227 |
atgcagtgcaacgagaggagaattgtgatggtgatgtagctgtggagataaaagatgggaaattctcatgggatgataacgatgagaacgacgctctgag |
326 |
Q |
| |
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||| |||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || || ||| |
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| T |
14281976 |
gtgctgtgcaaagagatgagagttgtggtggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgac |
14281877 |
T |
|
| Q |
327 |
agttgaagagttggtaattaagaaaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtg |
414 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| || || |||||||||||||||||||||||| |
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| T |
14281876 |
agttgaagagttggtaattaagaaaggggaccatgctgctattgtaggaacagttggatcgggcaagtcttcattattggcttctgtg |
14281789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 29 - 414
Target Start/End: Complemental strand, 14303932 - 14303547
Alignment:
| Q |
29 |
taactgttcttacctttgcaactgcaacttttcttggatttcctttgaattctggcactgttttcacgataacttcgattatcaagatacttcaagagcc |
128 |
Q |
| |
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||||||||||||| |||| | |||||||||| | || ||||| ||||| |||||||||||||||| ||||| | | |||||||||||||||||||| |
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| T |
14303932 |
taactgttcttacatttggagttgcaacttttatggggattcctctgaatgctggcactgttttcacagtaactgcagtgatcaagatacttcaagagcc |
14303833 |
T |
|
| Q |
129 |
tttgaggacttttcctcaggctcttatcatgatttctcaagcaacaatatctttagggaggttggatgagttcatgacgagtaaggaaatggatgagaat |
228 |
Q |
| |
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| |||| |||||||| ||||||||||||| ||||| |||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
14303832 |
tatgagtacttttccacaggctcttatcaatatttcgcaagcaacgatatcattagggaggttggataagttcatgatgagtaaggaaatggatgagaat |
14303733 |
T |
|
| Q |
229 |
gcagtgcaacgagaggagaattgtgatggtgatgtagctgtggagataaaagatgggaaattctcatgggatgataacgatgagaacgacgctctgagag |
328 |
Q |
| |
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||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| || ||| || ||| |
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| T |
14303732 |
gcagtgcaaagagaggagaactgtaatggtgatgtagctgtggagataaaagatgggaaattttcttgggatgatatggatgagaatgaggctttgcgag |
14303633 |
T |
|
| Q |
329 |
ttgaagagttggtaattaagaaaggggatcatgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtg |
414 |
Q |
| |
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|| | || ||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| |
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| T |
14303632 |
ttaaggaattggtgattaagaaaggggaccatgctgctgttgtaggaactgttggatcaggcaagtcttcattactggcttctgtg |
14303547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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