View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_15 (Length: 405)
Name: NF16149_low_15
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 25 - 387
Target Start/End: Complemental strand, 36333283 - 36332919
Alignment:
| Q |
25 |
atcatgttttcatgtcagaaaatcgttcaggaatcaggaaaactctctgttgttttgattttctgaaatctgttgggatctgtgctgtttttacgtgacc |
124 |
Q |
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| T |
36333283 |
atcatgttttcatgtcagaaaatcgttcaggaatcaggaaaactctctgttgttttgattttctgaaatctgttgggatctgtgctgtttttacgtgacc |
36333184 |
T |
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| Q |
125 |
aagaagatagtacaaattcaaaacagtaaataaagaaagaccaaactttcccttagtttatgggatatggaaacagataactaagtgatttaacacttta |
224 |
Q |
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| T |
36333183 |
aagaagatagtacaaattcaaaacagtaaataaagaaagaccaaactttcccttagtttatgggatatggaaacagataactaagtgatttaacacttta |
36333084 |
T |
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| Q |
225 |
acagtatcagtgatta--nnnnnnnactattaaccttttctttggctgctgctgatatttgattctgtgatgaagaggctgttcttatagcagcagaagc |
322 |
Q |
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| T |
36333083 |
acagtatcagtgattatttttttttactattaaccttttctttggctgctgctgatatttgattctgtgatgaagaggctgttcttatagcagcagaagc |
36332984 |
T |
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| Q |
323 |
atcattggatattatcatcttctgttgttgtagctgaagattctgctgatccatattattattat |
387 |
Q |
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| T |
36332983 |
atcattggatattatcatcttctgttgttgtagctgaagattctgctgatccatattattattat |
36332919 |
T |
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