View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_18 (Length: 386)
Name: NF16149_low_18
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 42 - 376
Target Start/End: Complemental strand, 7664715 - 7664384
Alignment:
| Q |
42 |
aggaatgcattagagcaactccaacggttgcttttttcatagcgtgcgccagctgacttcacgaaagaatggaaattttgcatgaattttggctggagta |
141 |
Q |
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| T |
7664715 |
aggaatgcattagagcaactccaacggttgcttttttcatagcgtgcgcc---tgacttcacgaaagaatggaaattttgcatgaattttggctggagta |
7664619 |
T |
|
| Q |
142 |
ctccggcatgtatttatggttgattcatgaagcaatggttatttcgattaaaataacaataaaaggaataaagaattcatgtatgaggtaaatttgtggg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7664618 |
ctccggcatgtatttatggttgattcatgaagcaatggttatttcgattaaaataacaataaaaggaataaagaattcatgtatgaggtaaatttgtagc |
7664519 |
T |
|
| Q |
242 |
atcaaatatgagtattttatagatcaccattgaagtaaaaaataaaggagttgcttcaatattatttggtccaataagatccacaaaataacaacgagta |
341 |
Q |
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| T |
7664518 |
atcagacatgagtattttatagatcaccattgaagtaaaaaatagaggagttgcttcaagattatttggtacaataagacccacaaaataacaacgagta |
7664419 |
T |
|
| Q |
342 |
aagttcaccattgaagatgctcttaggtacctttg |
376 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |
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| T |
7664418 |
aagttcaccattaaagatgctcttaggtacctttg |
7664384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 53 - 309
Target Start/End: Complemental strand, 49159811 - 49159557
Alignment:
| Q |
53 |
agagcaactccaacggttgcttttttcatagcgtgcgccagctgacttcacgaaagaatggaaattttgcatgaattttggctggagtactccggcatgt |
152 |
Q |
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| T |
49159811 |
agagcaactccaacatttgcttgtttcatagcgcgtgccaactatcatcaccaaagaatggaaattttgcatgaattttggctagagtactccaacatgt |
49159712 |
T |
|
| Q |
153 |
atttatggttgattcatgaagcaatggttatttcgattaaaataacaataaaaggaataaagaattcatgtatgaggtaaatttgtgggatcaaatatga |
252 |
Q |
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| T |
49159711 |
aattatggttgtttcatgaagcatcggttattttgattaaaataacaataaaaggaataaagtattgatg--tgaggtaaatttgtgggactcaatatga |
49159614 |
T |
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| Q |
253 |
gtattttatagatcaccattgaagtaaaaaataaaggagttgcttcaatattatttg |
309 |
Q |
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||||||||||||||| ||||| | ||||||||| | |||||| ||||| || ||||| |
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| T |
49159613 |
gtattttatagatcatcattggaataaaaaatagaagagttgtttcaagatgatttg |
49159557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 354
Target Start/End: Complemental strand, 5335227 - 5335028
Alignment:
| Q |
158 |
tggttgattcatgaagcaatggttatttcgattaaaataacaataa---aaggaataaagaattcatgtatgaggtaaatttgtgggatcaaatatgagt |
254 |
Q |
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|||||| ||||||||||||| ||| ||| |||||||||||||| || ||||||||||| ||| |||| ||| |||||||||||||| | || |||||| |
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| T |
5335227 |
tggttgcttcatgaagcaatagttcttttgattaaaataacaacaacagaaggaataaagcattaatgtttgaagtaaatttgtgggacctaacatgagt |
5335128 |
T |
|
| Q |
255 |
attttatagatcaccattgaagtaaaaaataaaggagttgcttcaatattatttggtccaataagatccacaaaataacaacgagtaaagttcaccattg |
354 |
Q |
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||||||||||||||||||| ||| ||||||| ||||||| ||| || || |||||| |||| | |||||||||||||| || | |||||||||||| |
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| T |
5335127 |
attttatagatcaccattggagtgaaaaatagaggagttactttaagatgatttggcacaatggaacccacaaaataacaatgaatggagttcaccattg |
5335028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 45737191 - 45737112
Alignment:
| Q |
188 |
attaaaataacaataaaaggaataaagaattcatgtatgaggtaaatttgtgggatcaaatatgagtattttatagatca |
267 |
Q |
| |
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||||||| ||||||| ||||| ||||| ||| |||| |||||||||||| ||||| ||||| | |||||||||||||| |
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| T |
45737191 |
attaaaaaaacaatagaaggactaaagtattaatgtgtgaggtaaatttatgggactcaatataattattttatagatca |
45737112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 202 - 364
Target Start/End: Complemental strand, 34374756 - 34374594
Alignment:
| Q |
202 |
aaaaggaataaagaattcatgtatgaggtaaatttgtgggatcaaatatgagtattttatagatcaccattgaagtaaaaaataaaggagttgcttcaat |
301 |
Q |
| |
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|||||||| |||| ||| |||| |||||||||||||||| | |||||||||||| |||| |||||||||||| |||||| |||| ||||| |||||||| |
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| T |
34374756 |
aaaaggaacaaagtattaatgtgtgaggtaaatttgtggaaccaaatatgagtaatttaaagatcaccattggagtaaataatataggagatgcttcaag |
34374657 |
T |
|
| Q |
302 |
attatttggtccaataagatccacaaaataacaacgagtaaagttcaccattgaagatgctct |
364 |
Q |
| |
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|| ||||||| ||||| || ||||||||||||| | ||| |||||||||||||||||||||| |
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| T |
34374656 |
atgatttggtacaatatgacccacaaaataacagtgggtagagttcaccattgaagatgctct |
34374594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 367
Target Start/End: Original strand, 4080158 - 4080302
Alignment:
| Q |
223 |
tatgaggtaaatttgtgggatcaaatatgagtattttatagatcaccattgaagtaaaaaataaaggagttgcttcaatattatttggtccaataagatc |
322 |
Q |
| |
|
||||||||||| || |||||| |||||| || |||| | ||||||||||||||||||||||| |||||| ||||| || || || |||| || | |
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| T |
4080158 |
tatgaggtaaagttatgggattcaatatgggttgtttagatttcaccattgaagtaaaaaataaatgagttgtttcaaaatgatgtgtctcaatgggacc |
4080257 |
T |
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| Q |
323 |
cacaaaataacaacgagtaaagttcaccattgaagatgctcttag |
367 |
Q |
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| T |
4080258 |
cacaaaataaccatttgtaaagatcaccattggaggtgctcttag |
4080302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 3311225 - 3311281
Alignment:
| Q |
228 |
ggtaaatttgtgggatcaaatatgagtattttatagatcaccattgaagtaaaaaat |
284 |
Q |
| |
|
|||||| |||||||| | || |||||||||||| || | |||||||||||||||||| |
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| T |
3311225 |
ggtaaaattgtgggacccaagatgagtattttaaagtttaccattgaagtaaaaaat |
3311281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 26454003 - 26454074
Alignment:
| Q |
223 |
tatgaggtaaatttgtgggatcaaatatgagtattttatagatcaccattgaagtaaaaaataaaggagttg |
294 |
Q |
| |
|
||||| ||||| |||||||| | ||||||||| |||| || ||||||||| ||||||||||||| |||||| |
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| T |
26454003 |
tatgaagtaaagttgtgggacctaatatgagttgtttagagttcaccattggagtaaaaaataaatgagttg |
26454074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 25812883 - 25812783
Alignment:
| Q |
236 |
tgtgggatcaaatatgagta-ttttatagatcaccattgaagtaaaaaataaaggagttgcttcaatattatttggtccaataagatccacaaaataaca |
334 |
Q |
| |
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||||||| | ||||||||| ||||| || |||||||||||||| ||||||| ||||||||| || || || ||| ||| ||||||||||||||||| |
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| T |
25812883 |
tgtgggacctaatatgagttcttttaaagttcaccattgaagtacaaaataagtgagttgctttaaaatgatgtggcataatgagatccacaaaataaca |
25812784 |
T |
|
| Q |
335 |
a |
335 |
Q |
| |
|
| |
|
|
| T |
25812783 |
a |
25812783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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