View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_19 (Length: 374)
Name: NF16149_low_19
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 35275441 - 35275797
Alignment:
| Q |
1 |
attggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275441 |
attggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattga |
35275540 |
T |
|
| Q |
101 |
cactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||| |
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| T |
35275541 |
cactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacttttgttttgaaacattctagtgagtgtcgataggtcag |
35275640 |
T |
|
| Q |
201 |
aagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagctatat |
300 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275641 |
aagatggtccagggatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagctatat |
35275740 |
T |
|
| Q |
301 |
aaattaattgaaacatggttataggataaacatattgtttatatatagggttaatat |
357 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35275741 |
aaattaattgaaacatggttataggatacacatattgtttatatatagggttaatat |
35275797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 35289558 - 35289849
Alignment:
| Q |
6 |
tgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgacactc |
105 |
Q |
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| T |
35289558 |
tgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaaattgacattc |
35289657 |
T |
|
| Q |
106 |
agtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcagaagat |
205 |
Q |
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| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35289658 |
tgcttgacctatggtgtgtgcaccagaaaggacagtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcagaagat |
35289757 |
T |
|
| Q |
206 |
ggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagcta |
297 |
Q |
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| T |
35289758 |
ggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactacccatgaaggacctccaagcta |
35289849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 34 - 321
Target Start/End: Original strand, 35280241 - 35280528
Alignment:
| Q |
34 |
ttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagat |
133 |
Q |
| |
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|||||||||||| || |||||| |||| ||||||| |||||||| ||||||||||| |||||||||||| || | ||| |||||||||||||||||||| |
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| T |
35280241 |
ttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaa |
35280340 |
T |
|
| Q |
134 |
aggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcagaagatggtcctggaatttggctatttgctgcac |
233 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| || |||||| | |||||||||| |
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| T |
35280341 |
aggactgtaaggtctcttaatgttagacctttgttttgaaacattttagtgagtgtggataggtcagaagctggtgaagggatttgggtgtttgctgcac |
35280440 |
T |
|
| Q |
234 |
tttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagctatataaattaattgaaacatggtta |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||| ||||| |
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| T |
35280441 |
tttgacttgctgttcttgcatctcttcttccaagtggtactatccatgaaggacctccaagctatatagattaattgaaacaaggtta |
35280528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 35307351 - 35307647
Alignment:
| Q |
1 |
attggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattga |
100 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
35307351 |
attggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattgg |
35307450 |
T |
|
| Q |
101 |
cactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcag |
200 |
Q |
| |
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||||| ||| |||||||||||||||||||| || ||||| |||||| || |||||||| ||| | |||||| |||||||| ||||| ||||||| |
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| T |
35307451 |
cactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtcacttgcagttagacccttggctgaaaacattgtagtgagagtggaaaggtcag |
35307550 |
T |
|
| Q |
201 |
aagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagcta |
297 |
Q |
| |
|
|| ||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
35307551 |
aaaatggtgaagggatttgactatttgctgcactttggcttgctgttcttgcatctcttcttccaagtggtactacccatgttggtcctccaagcta |
35307647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 35322352 - 35322648
Alignment:
| Q |
1 |
attggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattga |
100 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
35322352 |
attggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattgg |
35322451 |
T |
|
| Q |
101 |
cactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcag |
200 |
Q |
| |
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||||| ||| |||||||||||||||||||| || ||||| |||||| || |||||||| |||| | ||||||| | ||||| ||||| ||||||| |
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| T |
35322452 |
cactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtcacttgcagttagacccttgtctgtaaacattttggtgagagtggaaaggtcag |
35322551 |
T |
|
| Q |
201 |
aagatggtcctggaatttggctatttgctgcactttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagcta |
297 |
Q |
| |
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|| ||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
35322552 |
aaaatggtgaagggatttgactatttgctgcactttggcttgctgttcttgcatctcttcttccaagtggtactacccatgttggtcctccaagcta |
35322648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 34 - 316
Target Start/End: Original strand, 35311730 - 35312014
Alignment:
| Q |
34 |
ttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagat |
133 |
Q |
| |
|
|||||||||||| || |||||| |||||||||||| |||||||| ||||||| ||||||| ||| ||||||| ||| |||||||||||||||||||| |
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| T |
35311730 |
ttttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacaatcgacactctccttggcctatggtgtgtgcaccagaa |
35311829 |
T |
|
| Q |
134 |
aggactgtaaggtcatttaatgttagacctttgtttctaaacatggtagtgagtgtggataggtcagaagatggtcctggaatttggctatttgctgcac |
233 |
Q |
| |
|
|| ||||| || ||| || |||||||| ||| | |||||| ||||||||| ||| ||||| | | ||||||| || ||||||||||||||||||| |
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| T |
35311830 |
agtactgtgagatcacttgcagttagacccttggctaaaaacattgtagtgagtctggttaggttaaaggatggtctagggatttggctatttgctgcac |
35311929 |
T |
|
| Q |
234 |
tttgacttgctgttcttgcatctcttcttccaagtggtactgcccatgagggtcctccaagct--atataaattaattgaaacat |
316 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||||||| |
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| T |
35311930 |
tttgatttgctgttcttgcatctcttcttccaagtggtactgtccatgagggtcctccaagctacaaattaattaattgaaacat |
35312014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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