View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_21 (Length: 364)
Name: NF16149_low_21
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 29565178 - 29564847
Alignment:
| Q |
19 |
taaaagtaaagaaagaagtaaaatcaatgctgaaattcaaaaccatacatatgagaatacagcttatgctaaaaacaaaagcaaagaagcagatgaaatc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||| |
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| T |
29565178 |
taaaagtaaagaaagaagtaaaatcaatgctgaaattcaaaaccatacagcttaa--------ttatgctaaaaacaaaagcaaagaagcagttgaaatc |
29565087 |
T |
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| Q |
119 |
ggaagtgtaattaagcacacctgtgttcttgatacacgttccgtctcgtgtctgtgtatatatttaaacatgcatgttggtccaaatattacttgctcca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29565086 |
ggaagtgtaattaagcacacctgtgttcttgatacacgttccgtctcgtgtctgtgtatatatttaaacatgcatgttggtccaaatattacttgctcca |
29564987 |
T |
|
| Q |
219 |
gctatttatgtcgtataattaagccatca--atgtataatggacgacacaatgagaaacccaagagaatctcagtcctattgttcttgagggagacaaac |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29564986 |
gctatttatgtcgtataattaagccatcaatatgtataatg---gacacaatgagaaacccaagagaatctcagtcctattgttcttgagggagacaaac |
29564890 |
T |
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| Q |
317 |
aagatagaaagttacgtaaaatatatattcaatttcatctcac |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29564889 |
aagatagaaagttacgtaaaatatatattcaatttcatttcac |
29564847 |
T |
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