View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_24 (Length: 330)
Name: NF16149_low_24
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 23947574 - 23947875
Alignment:
| Q |
18 |
cattaggaggatcttgattgttgtctctaccttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgct |
117 |
Q |
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| T |
23947574 |
cattaggaggatcttgattgttgtctctaccttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgct |
23947673 |
T |
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| Q |
118 |
aatatcatgattcaaatcaggtggtaattcggattggagagagtgaagttgagtaagaattgaatcctgaaaaagaggaaccctaacaattgggccagac |
217 |
Q |
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| T |
23947674 |
aatatcatgattcgaatcaggtggtaattcggattggagagagtgaagttgagtaagaattgaatcctgaaaaagaggaaccctaacaattgggccagac |
23947773 |
T |
|
| Q |
218 |
atattggagacgtaaatgggtccaccccttggaattgagattgaaggatcatcaattgaacattctaattccaattcatcatcatccattattcttattc |
317 |
Q |
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| T |
23947774 |
atattggagacgaaaatgggtccaccccttggaattgagattgaaggatcatcaattgaacattctaattccaattcatcatcatccattattcttattc |
23947873 |
T |
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| Q |
318 |
tt |
319 |
Q |
| |
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|| |
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| T |
23947874 |
tt |
23947875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 49 - 274
Target Start/End: Original strand, 56241192 - 56241423
Alignment:
| Q |
49 |
ttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgc---taatatcatgattcaaatc---aggtggt |
142 |
Q |
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| T |
56241192 |
ttgaaagacttgtttcaaagacatgtccattaactcgtcctcagtaaaaactttaagatcatcgacgacggtaatatcataatcatgatgttgaggtggt |
56241291 |
T |
|
| Q |
143 |
aattcggattggagagagtgaagttgagtaagaattgaatcctgaaaaagaggaaccctaacaattgggccagacatattggagacgtaaatgggtccac |
242 |
Q |
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||||| ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56241292 |
aattcagattgtagagagtgaagttgagaaagaagtgaatcctgaaaaagaggaaccctaacaattgggccagacatattggagacgtaaatgggtccac |
56241391 |
T |
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| Q |
243 |
cccttggaattgagattgaaggatcatcaatt |
274 |
Q |
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|||| |||||||| |||||||||| ||||||| |
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| T |
56241392 |
ccctcggaattgaaattgaaggattatcaatt |
56241423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 16105366 - 16105065
Alignment:
| Q |
18 |
cattaggaggatcttgattgttgtctctaccttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16105366 |
cattaggaggatcttgattgttgtctctaccttgaaagacttgtttcaaagccatgtccattaaatcgtcctctgtaaaaactttaagatcatcgacgct |
16105267 |
T |
|
| Q |
118 |
aatatcatgattcaaatcaggtggtaattcggattggagagagtgaagttgagtaagaattgaatcctgaaaaagaggaaccctaacaattgggccagac |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16105266 |
gatatcatgattcgaatcaggtggtaattcggattggagagagtgaagttgagtaagaattgaatcttgaaaaagaggaaccctaacaattgggccagac |
16105167 |
T |
|
| Q |
218 |
atattggagacgtaaatgggtccaccccttggaattgagattgaaggatcatcaattgaacattctaattccaattcatcatcatccattattcttattc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16105166 |
atattggagacgtaaatgggtccaccccttggaattgagattgaaggatcatcaattgaaaattctaattccaattcatcatcatccattattcttattc |
16105067 |
T |
|
| Q |
318 |
tt |
319 |
Q |
| |
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|| |
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|
| T |
16105066 |
tt |
16105065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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