View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_26 (Length: 327)
Name: NF16149_low_26
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 5468876 - 5469182
Alignment:
| Q |
1 |
caaaaagtgtgtgtacgcccgcgcgcgttctggcatgtaagaatcgactacaaagacaaataagtgaaaaatataagcatttacctctaattaagatata |
100 |
Q |
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| T |
5468876 |
caaaaagtgtgtgtacgc--gcgcgcgttctggcatgtgagaatcgactacaaagacaaataagtgaaaaatataagcatttatctctaa----gatata |
5468969 |
T |
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| Q |
101 |
atgtttgatgtataaatgtcgcatcattagtatgtatcccaa--------------ctctgatgattttctttgttgaatctccaattctgattttgaat |
186 |
Q |
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| T |
5468970 |
atgtttgatgtataaatgtcgcatcattagtatgtatcccaattctgaatatccaactctgatgattttctttgttgaatctccaattctgattttgaat |
5469069 |
T |
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| Q |
187 |
tttgatttttctcagaatgctttattagttattgtgcttacaaagtcattgttttgctttatagtataaataaatattttcctatgctttcatgagagaa |
286 |
Q |
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| T |
5469070 |
tttgatttttctcagaatgcttta---gttattgtgcttacaaagtcattgttttgctttatagtataaagaaatattttcctatgctttcttgagagaa |
5469166 |
T |
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| Q |
287 |
acaatattatttctta |
302 |
Q |
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| T |
5469167 |
acaatgttatttctta |
5469182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 14319237 - 14319158
Alignment:
| Q |
184 |
aattttgatttttctcagaatgctttattagttattgtgcttacaaagtcattgttttgctttatagtataaataaatatt |
264 |
Q |
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| T |
14319237 |
aattttgattttcctgagaatgctt-attagttattgtgcttacaaagtcattgttctaatttataggatgaagaaatatt |
14319158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 9590476 - 9590394
Alignment:
| Q |
152 |
ttttctttgttgaatctccaattctgattttgaattttgatttttctcagaatgctttattagttattgtgcttacaaagtcat |
235 |
Q |
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| T |
9590476 |
ttttctttgttgaatccccaattctgattctgaatttggattttttttagaat-atgtattagtcattttgctttcaaagtcat |
9590394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 9590578 - 9590532
Alignment:
| Q |
62 |
aagtgaaaaatataagcatttacctctaattaagatataatgtttgatgta |
112 |
Q |
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| T |
9590578 |
aagtgaaaaatataagcatttacctc----taagctataatgtttgatgta |
9590532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 38572176 - 38572135
Alignment:
| Q |
208 |
ttattagttattgtgcttacaaagtcattgttttgctttata |
249 |
Q |
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| T |
38572176 |
ttattagttattgtacttacaaagtcactgttttgctttata |
38572135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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