View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_28 (Length: 317)
Name: NF16149_low_28
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 42158570 - 42158276
Alignment:
| Q |
1 |
atgtacctctaattttgttgttaagtgttagagatgccaaatttcgtgaccaatttaaannnnnnncagtttctaatatctgttgttatatcaacnnnnn |
100 |
Q |
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| T |
42158570 |
atgtatctctaattttgttgttaagtgttagagatgccaaatttcgtgaccaatttaaatttttttccgtttctaatatctgttgttatatcaacttttt |
42158471 |
T |
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| Q |
101 |
nnagtagtgatgatgatgatgtttttgattcggttatgtttacatttgtgactgcaatgcaatacaatatagggtggggattgaaattccaaaaattgaa |
200 |
Q |
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| T |
42158470 |
ttagtagtgatgatgatgatgtttttgattcggttatgtttacatttgtgactgcaatgcaatacaatgtagggtggggattgaaattccaaaaattgaa |
42158371 |
T |
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| Q |
201 |
gttcgttatgagaatttatctgtggaaggagatgtgtatgttggtagcagagctcttcctactttgcttaatgttaccatcaacactttggaggt |
295 |
Q |
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| T |
42158370 |
gtccgttatgagaatttatctgtggaaggagatgtgtatgttggtagcagagctcttcctactcttcttaatgttaccatcaatacattggaggt |
42158276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 137 - 295
Target Start/End: Complemental strand, 42178166 - 42178008
Alignment:
| Q |
137 |
tgtttacatttgtgactgcaatgcaatacaatatagggtggggattgaaattccaaaaattgaagttcgttatgagaatttatctgtggaaggagatgtg |
236 |
Q |
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| T |
42178166 |
tgtttacatttgtgactgcaatgcaatacaatatagggtggggattgaaattccaaaaattgaagttcgttatgagaatttatctgtggaaggagatgtg |
42178067 |
T |
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| Q |
237 |
tatgttggtagcagagctcttcctactttgcttaatgttaccatcaacactttggaggt |
295 |
Q |
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| T |
42178066 |
tatgttggtagcagagctcttcctactttgcttaatgttaccatcaacactttggaggt |
42178008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 160 - 295
Target Start/End: Complemental strand, 42146459 - 42146324
Alignment:
| Q |
160 |
caatacaatatagggtggggattgaaattccaaaaattgaagttcgttatgagaatttatctgtggaaggagatgtgtatgttggtagcagagctcttcc |
259 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||| || ||||| ||||| |
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| T |
42146459 |
caatacaatgtagggtggggattgaaattccaaaaattgaagtacgttatgaaaatttgtctgtggaaggagatgtgcatgttggaagtagagcacttcc |
42146360 |
T |
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| Q |
260 |
tactttgcttaatgttaccatcaacactttggaggt |
295 |
Q |
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| T |
42146359 |
tactctgcttaatgttaccatcaatactttggaggt |
42146324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 42137650 - 42137567
Alignment:
| Q |
163 |
tacaatatagggtggggattgaaattccaaaaattgaagttcgttatgagaatttatctgtggaaggagatgtgtatgttggta |
246 |
Q |
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| T |
42137650 |
tacaatacagggtggggattgaaattccaaaaattgaagtacggttcgaaaatgtatcggtggagggaaatgtgcatgttggta |
42137567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 11373420 - 11373372
Alignment:
| Q |
8 |
tctaattttgttgttaagtgttagagatgccaaatttcgtgaccaattt |
56 |
Q |
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| T |
11373420 |
tctatttttgttgctaagtgttagaaatgccaaatttgatgaccaattt |
11373372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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