View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16149_low_35 (Length: 271)

Name: NF16149_low_35
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16149_low_35
NF16149_low_35
[»] chr2 (3 HSPs)
chr2 (15-266)||(2015257-2015508)
chr2 (168-256)||(11845093-11845181)
chr2 (168-256)||(11849822-11849910)
[»] chr3 (6 HSPs)
chr3 (15-254)||(40568228-40568467)
chr3 (15-266)||(40579286-40579537)
chr3 (15-266)||(40572829-40573080)
chr3 (15-257)||(40597616-40597858)
chr3 (15-244)||(40601784-40602013)
chr3 (30-257)||(40591149-40591376)
[»] chr4 (3 HSPs)
chr4 (175-256)||(13765720-13765800)
chr4 (147-224)||(14155044-14155120)
chr4 (168-250)||(14153489-14153568)
[»] chr1 (5 HSPs)
chr1 (147-235)||(1868401-1868489)
chr1 (174-234)||(9161976-9162036)
chr1 (174-250)||(9229754-9229830)
chr1 (174-235)||(1842819-1842880)
chr1 (186-234)||(9156064-9156112)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 2015508 - 2015257
Alignment:
Q  15 accaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015508 accaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagt 2015409  T
Q  115 ccaaaatcagtgaccctaaccagattgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttg 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2015408 ccaaaatcagtgaccctaaccagattgagccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttg 2015309  T
Q  215 tttagagacagaagttcctttacttgtttacgaattcattccctatgctact 266  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  2015308 tttagagacagaagttcctttacttgtttacgaattcattcccaatggtact 2015257  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 11845093 - 11845181
Alignment:
Q  168 ctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattcc 256  Q
    ||||||||||||||| ||||||||||||| ||| | || || |||||||| ||||||||| |||| || |||||||| |||||||||||    
T  11845093 ctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcc 11845181  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 11849822 - 11849910
Alignment:
Q  168 ctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattcc 256  Q
    ||||||||||||||| ||||||||||||| ||| | || || |||||||| ||||||||| |||| || |||||||| |||||||||||    
T  11849822 ctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcc 11849910  T

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Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 40568228 - 40568467
Alignment:
Q  15 accaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagt 114  Q
    ||||| ||||| || ||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| || || ||||    
T  40568228 accaataactttgatgaaggtaagatcctaggccaaggtggtcagggaactgtttacaaaggagttttacaaaataaaagaattgtagcaataaaaaagt 40568327  T
Q  115 ccaaaatcagtgaccctaaccagattgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttg 214  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  40568328 ccaaagtcagtgacccaaaccagattgagccgttcatcaatgaagtggtcgttctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttg 40568427  T
Q  215 tttagagacagaagttcctttacttgtttacgaattcatt 254  Q
    |||||||||||||||||| || |||||||| |||||||||    
T  40568428 tttagagacagaagttcccttgcttgtttatgaattcatt 40568467  T

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Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 40579286 - 40579537
Alignment:
Q  15 accaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagt 114  Q
    |||||||||||||| ||||||| ||| ||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||| || || ||||    
T  40579286 accaacaacttcgatgaaggcacgatcctaggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagt 40579385  T
Q  115 ccaaaatcagtgaccctaaccagattgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttg 214  Q
    ||||||| |||||||| |||||||||||  ||||||||||||||||| |  | ||||| |||||||| |||||||||||||||||| | |||||||||||    
T  40579386 ccaaaataagtgacccgaaccagattgagtcgttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttg 40579485  T
Q  215 tttagagacagaagttcctttacttgtttacgaattcattccctatgctact 266  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||| ||||    
T  40579486 tttagagacagaagttccgttacttgtttacgaatttattcccaatggtact 40579537  T

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Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 40572829 - 40573080
Alignment:
Q  15 accaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagt 114  Q
    ||||||||||||||  |||||||||| ||||||||||| ||||| ||||  ||||||||||||||||||||| |||| ||||||||||| || || ||||    
T  40572829 accaacaacttcgatcaaggcaagatcctaggccaaggtggtcaaggaattgtttacaaaggagttttacaaaataacagaattgtagcaataaaaaagt 40572928  T
Q  115 ccaaaatcagtgaccctaaccagattgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttg 214  Q
    ||||||| |||||||| |||||| ||||  ||||||||||||||||| | || ||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  40572929 ccaaaataagtgacccgaaccaggttgagtcgttcatcaatgaagtggtcgtactttcccaaatcaaccatagaaatgtggtaaagatcttgggctgttg 40573028  T
Q  215 tttagagacagaagttcctttacttgtttacgaattcattccctatgctact 266  Q
    |||||||||||||||||| ||| |||| || ||||| |||||| ||| ||||    
T  40573029 tttagagacagaagttcccttagttgtgtatgaatttattcccaatggtact 40573080  T

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Target: chr3; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 40597616 - 40597858
Alignment:
Q  15 accaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagt 114  Q
    |||| ||||||| | |||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| || |||||||    
T  40597616 accagcaacttcaatgaaggcaaaatcctaggccaaggtggtcagggaacagtttacaaaggagttttagaagataaaagtattgtagcaataaagaagt 40597715  T
Q  115 ccaaaatcagtgaccctaaccagattgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttg 214  Q
    | |||||||||||||| |||||||||||  |||||||||||||||||   |||||||| |||||||||||||| ||||||||||| ||  | ||||||||    
T  40597716 caaaaatcagtgacccaaaccagattgagtcgttcatcaatgaagtggccgtgctttcccaaatcaaccataggaatgtggtaaaacttgtaggttgttg 40597815  T
Q  215 tttagagacagaagttcctttacttgtttacgaattcattccc 257  Q
    |||||| ||||||||||| || |||||||| ||||| ||||||    
T  40597816 tttagaaacagaagttccattgcttgtttatgaatttattccc 40597858  T

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Target: chr3; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 40601784 - 40602013
Alignment:
Q  15 accaacaacttcgacgaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagt 114  Q
    |||||||||||| | ||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || || ||||    
T  40601784 accaacaacttcaatgaaagcaggatcctaggccaaggtggtcagggaacagtttacaaaggagttttacaagataacagaattgtcgcaataaaaaagt 40601883  T
Q  115 ccaaaatcagtgaccctaaccagattgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttg 214  Q
    ||| |||||||||||  ||||||||||| ||||||||||||||||||||  | ||||| |||||||||||||||||||||||| |||| |||||||| ||    
T  40601884 ccacaatcagtgaccaaaaccagattgagccgttcatcaatgaagtgatcattctttctcaaatcaaccatagaaatgtggtacagcttttgggttgctg 40601983  T
Q  215 tttagagacagaagttcctttacttgttta 244  Q
    |||||| ||||||||||| || ||||||||    
T  40601984 tttagaaacagaagttccattgcttgttta 40602013  T

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Target: chr3; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 40591149 - 40591376
Alignment:
Q  30 gaaggcaagattctaggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgacc 129  Q
    ||||| |||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |||||    
T  40591149 gaaggaaagattctaggcaaaggttctcagggaacagtttacaaaggagttttacaagataaaagtattgtagcaataaaaaagtccaaaatcaatgacc 40591248  T
Q  130 ctaaccagattgatccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagt 229  Q
      ||||||||||| || ||||||||||||||| | || ||||| |||||||||||||||||||||||||   | ||||||||||||||||||||||||||    
T  40591249 aaaaccagattgagccattcatcaatgaagtggtcgttctttctcaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagt 40591348  T
Q  230 tcctttacttgtttacgaattcattccc 257  Q
    ||| || |||||||| ||||||||||||    
T  40591349 tccattgcttgtttatgaattcattccc 40591376  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 13765800 - 13765720
Alignment:
Q  175 aaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattcc 256  Q
    ||||||||| || ||||||||||||  | ||| ||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  13765800 aaatcaaccgta-aaatgtggtaaattttttgagttgttgtttagagacagaagttcccttacttctttacgaatttattcc 13765720  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 14155044 - 14155120
Alignment:
Q  147 ttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagaca 224  Q
    |||||||||||| || |||| ||||| |||||||| |||||||||||||||||||| || |||||||| |||||||||    
T  14155044 ttcatcaatgaaatggttgttctttcccaaatcaatcatagaaatgtggtaaagct-tttggttgttgcttagagaca 14155120  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 14153568 - 14153489
Alignment:
Q  168 ctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgttt-agagacagaagttcctttacttgtttacgaatt 250  Q
    ||||| ||||||||||||| |||||||||||| || |||||||||| ||| |||||||||||||||    ||||||||||||||    
T  14153568 ctttcccaaatcaaccatataaatgtggtaaatcttttgggttgttttttaagagacagaagttcc----cttgtttacgaatt 14153489  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 1868401 - 1868489
Alignment:
Q  147 ttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttccttt 235  Q
    ||||| ||||| ||| |||| || || ||||| || ||||| ||||| || || |||||||| ||||||||||||||||||||||||||    
T  1868401 ttcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttccttt 1868489  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 9162036 - 9161976
Alignment:
Q  174 caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctt 234  Q
    ||||| || ||||||||||| || || |||||||| |||||||||||||||||||||||||    
T  9162036 caaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaagttcctt 9161976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 9229830 - 9229754
Alignment:
Q  174 caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaatt 250  Q
    ||||| || ||||||||||| || || |||||||| |||||||| |||||| ||||||||||||| ||||| |||||    
T  9229830 caaataaatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagtttatgaatt 9229754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 1842819 - 1842880
Alignment:
Q  174 caaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttccttt 235  Q
    ||||| || ||||| ||||| || || |||||||| ||||||||||||||||||||||||||    
T  1842819 caaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttccttt 1842880  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 9156112 - 9156064
Alignment:
Q  186 agaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctt 234  Q
    |||||||| || || |||||||| |||||||||||||||||||||||||    
T  9156112 agaaatgttgtcaaactcttgggatgttgtttagagacagaagttcctt 9156064  T

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