View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_38 (Length: 256)
Name: NF16149_low_38
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 52095273 - 52095508
Alignment:
| Q |
1 |
acaccaaccaatacgtacagcataatagataaaattccacaactgcatcaactaaatcaagaaggcagtgaaacagcatcatcattacagtttatccgga |
100 |
Q |
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| T |
52095273 |
acaccaaccaatacgtacagcataatagataaaattccacaactgcatcaactaaatcaagaaggcagtgaaacagcatcatcattacagtttatccgga |
52095372 |
T |
|
| Q |
101 |
aacagtgaaacgaaagccatgtctccaatatcagtaaacacatcaacaaaactgcagtacatcaagaaacaatatgttgctagactctatcatagaacag |
200 |
Q |
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| T |
52095373 |
aacagtgaaacgaaagccatgtctccaatatcagtaaacacatcaataaaactgcagtacatcaagaaacaatatgttgctagactctatcatagaacag |
52095472 |
T |
|
| Q |
201 |
atgtagcctaatagtgccaccaagactaaggataat |
236 |
Q |
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| T |
52095473 |
atgtagcctaatagtgccaccaagactaaggataat |
52095508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 36410778 - 36411012
Alignment:
| Q |
1 |
acaccaaccaatacgtacagcataatagataaaattccacaactgcatcaactaaatcaagaaggcagtgaaacagcatcatcattacagtttatccgga |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||| |||||| ||| |||||| ||| |
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| T |
36410778 |
acaccaaccaatacatacagcataatagataaaattccacaacttcatcagctaaatccagaaggcagcgaaacagcaacatcatgacattttatctgga |
36410877 |
T |
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| Q |
101 |
aacagtgaaacgaaagccatgtctccaatatcagtaaaca---catcaacaaaactgcagtacatcaagaaacaatatgttgctagactctatcatagaa |
197 |
Q |
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| T |
36410878 |
agcagtgaaacgaaagccacgtcttcaatatcagtaaacacatcatcaacagaacttcagtgtatcaagaagcaatatgtttctagactctatcatagaa |
36410977 |
T |
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| Q |
198 |
cagatgtagcctaatagtgccaccaagactaagga |
232 |
Q |
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| T |
36410978 |
cagatgtagcctaatagtgccaccaagactaagga |
36411012 |
T |
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