View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_4 (Length: 656)
Name: NF16149_low_4
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_4 |
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| [»] scaffold0231 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 646
Target Start/End: Complemental strand, 35521995 - 35521357
Alignment:
| Q |
19 |
gaatacacaatagtaattaaggtaacataataggatttatatattgaccaaagattacttaatatgtatcgattttgagacggtactagtgcaaaaagag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35521995 |
gaatacacaatagtaattaaggtaacataataggatttatatattgaccaaagattccttaatttgtatcgattttgagacggtactagtgcaaaaagag |
35521896 |
T |
|
| Q |
119 |
ggggttgggtttcctgcaccaagtaaatcgacgtggtcacaataatcatcctatcaagatcaaacattttaggttttaagatcagtattatttaaattat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35521895 |
ggggttgggtttcctgcaccaagtaaatcgacgtggtcacaataatcatcctatcaagatcaaacattttaggttt-aagatcagtattatttaaattat |
35521797 |
T |
|
| Q |
219 |
acagtcaaaagnnnnnnnnnnnttgtattattttttgcaaaggtatacaatgtacaggttattttttgtaccctctagaatgcaacattgtgcatttgtg |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521796 |
acagtcaaaagaaaaaaaaa--ttgtattattttttgcaaaggtatacaatgtacaggttattttttgtaccctctagaatgcaacattgtgcatttgtg |
35521699 |
T |
|
| Q |
319 |
actaatagtagtaacaagaacatttggaatcaataagtgtagtgaagtgaaccctaggcgtgtaaactcgttattacctaataaagatgctaatttatct |
418 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521698 |
actaatagcagtaacaagaacatttggaatcaataagtgtagtgaagtgaaccctaggcgtgtaaactcgttattacctaataaagatgctaatttatct |
35521599 |
T |
|
| Q |
419 |
catttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaatagttttataactttgtcaat-------tcct |
505 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | | |
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| T |
35521598 |
catttatagtagagaggtcggttagttcttccctagttattagttttacatcagttacagtacttcaatagttttataactttgtatataaatcaataat |
35521499 |
T |
|
| Q |
506 |
ctttctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaatt-cctctttctctgatattcaatatggtatcagattagctcac |
604 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521498 |
agctctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattccctctttctctgatattcaatatggtatcagattagctcac |
35521399 |
T |
|
| Q |
605 |
ttccgcttttcttctggcgattgtgtttcttcgctgttcatc |
646 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35521398 |
ttccgcttttcttctggcgattgtgtttcttcgatgttcatc |
35521357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 390 - 585
Target Start/End: Complemental strand, 35516943 - 35516733
Alignment:
| Q |
390 |
tattacctaataaagatgctaatttatctcatt--tatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaat |
481 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
35516943 |
tattatctaataaagatgctaatttatctcattattatagtagagaagtctgttagttcttccctagttattagttttacatcagttatagtacttcaat |
35516844 |
T |
|
| Q |
482 |
agttttataactttgtcaattcctcttt-------ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctct |
574 |
Q |
| |
|
|||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35516843 |
agttttataactttgtatataaatcaatagcagctctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcccctttctct |
35516744 |
T |
|
| Q |
575 |
gatattcaata |
585 |
Q |
| |
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||||||||||| |
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| T |
35516743 |
gatattcaata |
35516733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 5e-64; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 390 - 586
Target Start/End: Original strand, 33769091 - 33769300
Alignment:
| Q |
390 |
tattacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaatag |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
33769091 |
tattacctaataaagatgctaatttatctcatttatagtagagaagtctgttagttctcccctagttattagttttacatcagttacagtacttcaatag |
33769190 |
T |
|
| Q |
484 |
ttttataactttgtcaattcctcttt-------ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctga |
576 |
Q |
| |
|
|||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33769191 |
ttttataactttgtatataaatcaatagcagctctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctga |
33769290 |
T |
|
| Q |
577 |
tattcaatat |
586 |
Q |
| |
|
|||||||||| |
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|
| T |
33769291 |
tattcaatat |
33769300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 389 - 497
Target Start/End: Complemental strand, 24236118 - 24236004
Alignment:
| Q |
389 |
ttattacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaata |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
24236118 |
ttattacctaataaagatgctaatttatctcatttatagtagagaagtctgttagttcttccctagttattagttttacatgagttacaatacttcaata |
24236019 |
T |
|
| Q |
483 |
gttttataactttgt |
497 |
Q |
| |
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||||||||||||||| |
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| T |
24236018 |
gttttataactttgt |
24236004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 510 - 580
Target Start/End: Original strand, 33765311 - 33765381
Alignment:
| Q |
510 |
ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctgatatt |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33765311 |
ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttccctgatatt |
33765381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 33765233 - 33765297
Alignment:
| Q |
401 |
aaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
33765233 |
aaagatgctaatttatctcatttatagtagagaagtctgttagttcttccctagttattagtttt |
33765297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 536 - 618
Target Start/End: Complemental strand, 30724055 - 30723972
Alignment:
| Q |
536 |
acaataaaatgagaattacatctcaattcctctttctctgatattcaatatggtatca-gattagctcacttccgcttttcttc |
618 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||||||||| || ||||||||| | || ||||||||| |||||||||| |
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|
| T |
30724055 |
acaataaaatgagaattacatctcaattcttgctgctctgatatttaagatggtatcatgtttcgctcacttcggcttttcttc |
30723972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 580
Target Start/End: Complemental strand, 24236003 - 24235962
Alignment:
| Q |
539 |
ataaaatgagaattacatctcaattcctctttctctgatatt |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24236003 |
ataaaatgagaattacatctcaattcctctttctatgatatt |
24235962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 389 - 497
Target Start/End: Complemental strand, 2793 - 2679
Alignment:
| Q |
389 |
ttattacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaata |
482 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||| |||||||||||| |
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|
| T |
2793 |
ttattacctaataaagatgctaatttatcccatttatagtagagaagtctgttagttcttccctagttgttagttttacatcagttatagtacttcaata |
2694 |
T |
|
| Q |
483 |
gttttataactttgt |
497 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2693 |
gttttataactttgt |
2679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 539 - 580
Target Start/End: Complemental strand, 2678 - 2637
Alignment:
| Q |
539 |
ataaaatgagaattacatctcaattcctctttctctgatatt |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2678 |
ataaaatgagaattacatctcaattcctctttctatgatatt |
2637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 390 - 584
Target Start/End: Complemental strand, 12472137 - 12471930
Alignment:
| Q |
390 |
tattacctaataaagatgctaatttatctcatttatagtagagaggtctgttag-ttcttccctagttattagtttt-----gttacagtacttcaatag |
483 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||| || ||||| || || ||||||||||||||| |||||| ||||||||||| |
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| T |
12472137 |
tattacttaataaatatgctaatttatctcatttatagtagagaaatcagttagcttttttcctagttattagtttatgtcagttacaatacttcaatag |
12472038 |
T |
|
| Q |
484 |
ttttataactttgtcaattcctcttt-------ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctga |
576 |
Q |
| |
|
||||| |||||||| || || | |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| | |||||| || |
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|
| T |
12472037 |
ttttagaactttgtatataaatcaatagcagctctctatgtaaatcagatttttacataacaataaaataagaattacatctcatttcttatttctcaga |
12471938 |
T |
|
| Q |
577 |
tattcaat |
584 |
Q |
| |
|
||||||| |
|
|
| T |
12471937 |
cattcaat |
12471930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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