View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_40 (Length: 245)
Name: NF16149_low_40
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 47248770 - 47248985
Alignment:
| Q |
14 |
agcaaaggaggtggtcataatgttactttactatttaaaggaatttttaaagtttggtgccgcttttttacattgtcatggagctgattatgttgtagaa |
113 |
Q |
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| T |
47248770 |
agcaaaggagttggtcagaatgttgctttactatttaaaggaatttttcaagtttgctgccgcttttttaaattgtcatggagctgattcagttgtagaa |
47248869 |
T |
|
| Q |
114 |
attagctcattatgggcttatggcaagggctgaaaggcatgttgtaggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgtta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47248870 |
attagctcattatgggcttatggcaagggctgaaaggcatgttctaggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgtta |
47248969 |
T |
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| Q |
214 |
aggctatgttgaattg |
229 |
Q |
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|||||||||||||||| |
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| T |
47248970 |
aggctatgttgaattg |
47248985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 10010172 - 10009962
Alignment:
| Q |
14 |
agcaaaggaggtggtcataatgttactttactatttaaaggaatttttaaagtttggtgccgcttttttacattgtcatggagctgattatgttgtagaa |
113 |
Q |
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| T |
10010172 |
agcaagggagttggtcaggatgttactttactatttaaaggactttttaaagttttgtgccgcttttttacgttgtcatggggctgattcaattgcagaa |
10010073 |
T |
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| Q |
114 |
attagctcattatgggcttatggcaagggctgaaaggcatgttgtaggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgtta |
213 |
Q |
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| T |
10010072 |
attagctctgtatgggcttatggcaagggttgaaaggcatgttataggagtagtgaagctttgcctcaaatatcattaatggattggtaatggtttgtta |
10009973 |
T |
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| Q |
214 |
aggctatgttg |
224 |
Q |
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||||||||||| |
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| T |
10009972 |
aggctatgttg |
10009962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 42310589 - 42310400
Alignment:
| Q |
14 |
agcaaaggaggtggtcataatgttactttactatttaaaggaatttttaaagtttggtgccgcttttttacattgtcatggagctgattatgttgtagaa |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
42310589 |
agcaaaggaggtggtcagaatgttactttactatttaaaggaatttttcaagtttggtgccgcttttttacattgtcatggagctgattaagttgcagaa |
42310490 |
T |
|
| Q |
114 |
attagctcattatgggcttatggcaagggctgaaaggcatgttgtaggagtagtgaagctttgcctcaaatatcatttatggattggtaa |
203 |
Q |
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| T |
42310489 |
attagctcattatgggcttatggcaagggctgaaaggcatgttctaggagtggtgaagttttgcctcaaatatcatttatggattggtaa |
42310400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 12459933 - 12459841
Alignment:
| Q |
119 |
ctcattatgggcttatggcaagggctgaaaggcatgttgtaggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgt |
211 |
Q |
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||||||| | |||||| ||||| | ||||||| |||| | |||| |||||||||||| ||||||||||||| ||| ||||| |||||||||| |
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| T |
12459933 |
ctcattaggagcttatagcaagtgatgaaaggtgtgttcttggagcagtgaagctttgtctcaaatatcattgatgtattggaaatggtttgt |
12459841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 12390559 - 12390515
Alignment:
| Q |
180 |
caaatatcatttatggattggtaatggtttgttaaggctatgttg |
224 |
Q |
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| T |
12390559 |
caaatatcattgatggattggaaatggtttgttaaggctatgttg |
12390515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 40141197 - 40141272
Alignment:
| Q |
148 |
aggcatgttgtaggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgttaaggctatgttg |
224 |
Q |
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|||| |||| ||||||||||| || ||||| ||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
40141197 |
aggcgtgttttaggagtagtgtaggtttgca-caaatatcattgatggattggaaatggtttgtttaggctatgttg |
40141272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 16044344 - 16044409
Alignment:
| Q |
158 |
taggagtagtgaagctttgcctcaaatatcatttatggattggtaatggtttgttaaggctatgttg |
224 |
Q |
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| T |
16044344 |
taggagtagtgtaggtttgca-caaatatcactgatggattggaaatggtttgttgaggctatgttg |
16044409 |
T |
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