View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16149_low_42 (Length: 242)

Name: NF16149_low_42
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16149_low_42
NF16149_low_42
[»] chr7 (1 HSPs)
chr7 (1-226)||(6572678-6572903)
[»] chr3 (20 HSPs)
chr3 (1-226)||(8471985-8472210)
chr3 (38-226)||(6838281-6838469)
chr3 (1-226)||(8568328-8568553)
chr3 (1-217)||(4388326-4388542)
chr3 (29-216)||(5268508-5268695)
chr3 (1-216)||(5250593-5250808)
chr3 (5-100)||(6519668-6519763)
chr3 (5-100)||(6553944-6554039)
chr3 (7-100)||(6947699-6947792)
chr3 (40-220)||(5299194-5299374)
chr3 (5-96)||(6736418-6736509)
chr3 (1-100)||(6448288-6448387)
chr3 (5-100)||(8455082-8455177)
chr3 (5-100)||(6479488-6479583)
chr3 (1-100)||(6721569-6721668)
chr3 (5-100)||(8590157-8590252)
chr3 (1-100)||(13270094-13270193)
chr3 (1-190)||(6259606-6259795)
chr3 (1-100)||(5281108-5281207)
chr3 (1-191)||(6900540-6900730)
[»] scaffold0425 (1 HSPs)
scaffold0425 (5-100)||(6983-7078)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6572903 - 6572678
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6572903 ccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 6572804  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatg 200  Q
     |||||||||| ||| | ||||| |||| ||| ||||||| ||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||  |    
T  6572803 attgatacttggttgtcgttgtctttgtatgaaagcaaatggttgattatttcttctttctcaccctctctaccatatatgcaagatttatccaccagag 6572704  T
Q  201 atgcagttggcaatctttttgaggat 226  Q
    ||||||||||| ||||||||||||||    
T  6572703 atgcagttggcgatctttttgaggat 6572678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8471985 - 8472210
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||     
T  8471985 ccaaactttaagttcaaactgcttgtccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccaggcaaacccactatgctgata 8472084  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatg 200  Q
    ||||||||||| ||||||||||| ||||  || |||||||| |||||||  |||||||||| ||| |||||||||  |||| ||||||||||||| || |    
T  8472085 gttgatacttggttgccattgtcgttgtaagaaagcaaatacttgattaattcttctttgtcaccttctctaccacgtatggaagattcatccactaaag 8472184  T
Q  201 atgcagttggcaatctttttgaggat 226  Q
    ||||||||||| ||||||| ||||||    
T  8472185 atgcagttggcgatcttttcgaggat 8472210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 38 - 226
Target Start/End: Complemental strand, 6838469 - 6838281
Alignment:
Q  38 tcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacagca 137  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||  |||||||    
T  6838469 tcattgtagacaagctgagcaagggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtaagacagca 6838370  T
Q  138 aatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggcaatctttttgaggat 226  Q
    ||||||| ||||| |||||||| | ||| |||||||||  |||| |||||||||||||||| |||||||||||  ||||||||||||||    
T  6838369 aatagttaattatttcttctttttcaccttctctaccacgtatggaagattcatccaccaaagatgcagttggagatctttttgaggat 6838281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8568553 - 8568328
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||||||||||||| |||||||| ||| | |||||||||||||||||| |||||||||||||||| ||||||||||| | |||||| || || |||    
T  8568553 ccaagctttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatcccacctagacccacaatacttatt 8568454  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatg 200  Q
          || || ||||||   || |||||| | |||||||| |||||||| |  | ||| | | | |||||||||||||||||||||||||||||||| |    
T  8568453 acgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatatgcaagattcatccaccaaag 8568354  T
Q  201 atgcagttggcaatctttttgaggat 226  Q
    | ||||||||||||||||||||||||    
T  8568353 acgcagttggcaatctttttgaggat 8568328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4388542 - 4388326
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||||||||||||||||||  | ||||||  |||||||||| ||||| |||||||| |||||||| ||||| ||||| | ||||||||||||||||    
T  4388542 ccaagctttaagttcaaaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt 4388443  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatg 200  Q
     ||| |||||| |||||  ||||  |||| ||||| ||| |||||| || ||| ||||||| ||| | ||||||||||||||  ||| |||||||||| |    
T  4388442 attggtacttggttgccgctgtctatgtcagacagtaaaaagttgactaactcctctttgtcaccgtttctaccatatatgctcgatccatccaccaaag 4388343  T
Q  201 atgcagttggcaatctt 217  Q
    ||| |||||| ||||||    
T  4388342 atgtagttggaaatctt 4388326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 5268508 - 5268695
Alignment:
Q  29 atcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgt 128  Q
    ||||| ||||||||||| || |||||||||||||||||||| ||||| ||||| | |||||||||||||||| ||| ||| || ||||| |||||  |||    
T  5268508 atcctttggtcattgtacacgagttgagcaagggtggtcttacccattccaccgagacccactatgctgattattggtacatggttgcccttgtctatgt 5268607  T
Q  129 ctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggcaatct 216  Q
    | ||||| ||| | ||||||| ||| || |||| ||| ||||||||||||||||  |||||||||||||| |||| ||||||||||||    
T  5268608 cagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctggattcatccaccaaagatgtagttggcaatct 5268695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 5250593 - 5250808
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||||||||| || |||||| ||||| |||||  |||| |||||||| |||||||| ||||| ||||| | ||||||||||||||||    
T  5250593 ccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccattccaccgagacccactatgctgatt 5250692  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatg 200  Q
     ||| ||| || |||||| |||   |||| ||||| ||| | |  |||| ||| || |||| ||| ||||||||||||||||  |||||||||||||| |    
T  5250693 attggtacatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccatctctaccatatatgctcgattcatccaccaaag 5250792  T
Q  201 atgcagttggcaatct 216  Q
     || |||||| |||||    
T  5250793 ctgtagttggaaatct 5250808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 6519763 - 6519668
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||||||||   || | | ||||||||||||| |||||||||||||||| || ||||| || || ||||||||||||||||||    
T  6519763 gctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgttgagcaagggtggttttacccattcctcctaaacccactatgctgatt 6519668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 6554039 - 6553944
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||||||||  ||| | | ||| ||||| ||||| | |||||||||||| ||||||||||| || ||||||||||||||||||    
T  6554039 gctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgatt 6553944  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 6947699 - 6947792
Alignment:
Q  7 tttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||| |||||||||| ||| ||| | | ||||||||| ||||| | |||||||||||| ||||||||||| || ||||||||||||||||||    
T  6947699 tttaaggtcaaaatgctcctctatcttgttgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgatt 6947792  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 5299194 - 5299374
Alignment:
Q  40 attgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgattgttgatacttgcttgccattgtccttgtctgacagcaaa 139  Q
    |||||| |||||||||||||||||||| || ||||| ||||| | |||||||||||||||| ||| |||  | | ||||   ||  |||| || || |||    
T  5299194 attgtacacaagttgagcaagggtggtttttcccattccacctagacccactatgctgattattggtacacggtcgccagcatctatgtcggaaagtaaa 5299293  T
Q  140 tagttgattatctcttctttgttaccctctctaccatatatgcaagattcatccaccaatgatgcagttggcaatcttttt 220  Q
     | ||| |||  || ||||||| ||| ||||| ||||||||||  |||||||||||||| |||| | ||||||||||||||    
T  5299294 aatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatcttttt 5299374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 6736418 - 6736509
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgct 96  Q
    ||||||||||||||||||||||  ||| | | ||| ||||| ||||| | |||||||||||| ||||||||||| || ||||||||||||||    
T  6736418 gctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgct 6736509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6448387 - 6448288
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||| ||||||||||||||||| ||  ||| | | || |||||| ||||| | |||||  |||||||| ||||||||||||| ||||||||||||||||    
T  6448387 ccaagatttaagttcaaaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatcccacccagacccactatgctgatt 6448288  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 8455082 - 8455177
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||||| ||  ||| | | ||||||||| ||||| | |||||||||||| || |||||||| || ||||| ||||||||||||    
T  8455082 gctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccctcctaaaccgactatgctgatt 8455177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 6479583 - 6479488
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||| | ||| ||| | | ||  ||||| ||||| | |||||||||||| ||||||||||| || ||||| ||||||||||||    
T  6479583 gctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccaactatgctgatt 6479488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6721668 - 6721569
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||||||||||| | |||| | | ||||| ||||||||||| ||||| || |||||||| ||||| || ||||||  || ||||||||| ||||||    
T  6721668 ccaagctttaagttcatattgctccactatcctgtggtcattgtaaacaagctgggcaagggttgtcttacctatcccaatcagacccactatactgatt 6721569  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 8590157 - 8590252
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||| ||||||||||  || ||| | | ||| ||||| ||||| | |||||||||||| ||||||||||| || ||||| ||||||||||||    
T  8590157 gctttaagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgatt 8590252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 13270193 - 13270094
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||| |||||| |||| ||  ||||| ||||||||||| ||||| ||||||||||  ||||| ||||||||   || ||||||||| ||||||    
T  13270193 ccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaagggctgtcttacccatccccatcagacccactatactgatt 13270094  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 6259606 - 6259795
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||| |||||| |||| ||  ||||| ||||||||||| ||||| || |||||||  ||||| ||||||||   || ||||||||| ||||||    
T  6259606 ccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttacccatccccgtcagacccactatactgatt 6259705  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattca 190  Q
     | ||||| || || |  ||||   ||||||| || ||| | |||||||| || ||||| | ||  |||||||||||||||  |||||||    
T  6259706 atggatacctggtttcggttgtaactgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatgatagattca 6259795  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5281108 - 5281207
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    |||||||||| ||||||||||||  |  || || | ||| || || ||||| | ||||||||||||||| |||||||||||  ||||||||||| |||||    
T  5281108 ccaagctttatgttcaaaatgctctttaattctatcgtcgttatacacaagctcagcaagggtggtcttacccatcccaccagaacccactatggtgatt 5281207  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 6900540 - 6900730
Alignment:
Q  1 ccaagctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||| ||||||||||| | | ||| | | ||||| ||| ||||| || || ||||| ||||| |||||||||  || ||||||||  ||||||    
T  6900540 ccaagctttaatttcaaaatgctccacgatcatgtcgtcatagtaaacaagctgggcgagggttgtcttacccatcccaatcacacccactacactgatt 6900639  T
Q  101 gttgatacttgcttgccattgtccttgtctgacagcaaatagttgattatctcttctttgttaccctctctaccatatatgcaagattcat 191  Q
     | | |||||| |||| | ||||  |||| || || ||||||| |||||| || | ||| | |  ||||||| |||||||| |||||||||    
T  6900640 atgggtacttggttgcgactgtcactgtcggaaagtaaatagtcgattatttcgtatttctcaagctctctatcatatatgaaagattcat 6900730  T

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Target: scaffold0425 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 7078 - 6983
Alignment:
Q  5 gctttaagttcaaaatgcttctccatcctctggtcattgtagacaagttgagcaagggtggtcttccccatcccacccaaacccactatgctgatt 100  Q
    ||||||||||||||||||||||  ||| | | ||| ||||| ||||| | |||||||||||| ||||||||||| || ||||||||||||||||||    
T  7078 gctttaagttcaaaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgatt 6983  T

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