View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_48 (Length: 209)
Name: NF16149_low_48
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 3898753 - 3898930
Alignment:
| Q |
16 |
caaaggacgctgcgagttcaattgcggataaagcaaaagaagacacagacaaggctgttgaggcagtagggagtgctggagataaggttaaagattatgc |
115 |
Q |
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| T |
3898753 |
caaaggacgctgcaagttcaattgcggataaagcaaaagaagacacagacaaggctgttgaggcagtagggagtgctggagataaggtaaaagattatgc |
3898852 |
T |
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| Q |
116 |
ttatgatgcaaatgacaaaaccaaggaagcaataggttctgctactgataaggcaaaagaaggatttgaggcagcaac |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898853 |
ttatgatgcaaatgacaaaaccaaggaagcaataggttctgctactgataaggcaaaagaaggatttgaggcagcaac |
3898930 |
T |
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