View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16149_low_5 (Length: 560)

Name: NF16149_low_5
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16149_low_5
NF16149_low_5
[»] chr8 (10 HSPs)
chr8 (17-433)||(25692409-25692826)
chr8 (16-368)||(25384125-25384478)
chr8 (20-232)||(25798558-25798771)
chr8 (20-236)||(25488161-25488382)
chr8 (89-220)||(25602698-25602836)
chr8 (257-344)||(25602609-25602696)
chr8 (393-436)||(25389413-25389456)
chr8 (489-533)||(25383499-25383543)
chr8 (489-533)||(25645360-25645407)
chr8 (396-436)||(25384082-25384122)
[»] scaffold0070 (3 HSPs)
scaffold0070 (16-434)||(19096-19515)
scaffold0070 (20-399)||(38497-38866)
scaffold0070 (16-82)||(19031-19098)
[»] scaffold0955 (2 HSPs)
scaffold0955 (45-399)||(3574-3918)
scaffold0955 (389-436)||(3418-3465)
[»] chr3 (1 HSPs)
chr3 (18-227)||(20591918-20592127)
[»] chr5 (1 HSPs)
chr5 (275-347)||(16499164-16499236)


Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Complemental strand, 25692826 - 25692409
Alignment:
Q  17 ttgtaacacatacattgataaacatctaaaagaagaa-cacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagc 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25692826 ttgtaacacatacattgataaacatctaaaagaagaagcacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagc 25692727  T
Q  116 atctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  25692726 atctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcattgaaccgttgcctcatgacttatttgattttcgtaagtat 25692627  T
Q  216 ctatgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25692626 ctatgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcag 25692527  T
Q  316 cacatccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaatatgaaaaaatatagacataattcattttttaaaaatcttatttttc 415  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  25692526 cacatccattgcaatttcctcaacaagttcagcttctgttctgtttgtacaaatatggaaaaatatagacatacttcattttttaaaaatcttatttttc 25692427  T
Q  416 taatagttaatcaaataa 433  Q
    |||||| |||||||||||    
T  25692426 taatagctaatcaaataa 25692409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 368
Target Start/End: Complemental strand, 25384478 - 25384125
Alignment:
Q  16 tttgtaacacatacattgataaacatctaaaagaagaa-cacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaag 114  Q
    ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  25384478 tttgtaacacatacattgataaatatgtaaaagaagaagcacatttataatgcacctaaaatagtttttcataagcttctgaatctttcatatatgaaag 25384379  T
Q  115 catctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagta 214  Q
    ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  25384378 catctcatgagtcaaacgaagcatgcggacgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttagttgattttcataagta 25384279  T
Q  215 tctatgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgca 314  Q
    |||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||| |||||||  |||| |||||||||| | |||| ||||||||    
T  25384278 tctatgcttttatagtattgtagctgaagttgtgcaagttgcactaatttagtaatttggtgatccagatcacgaacataaacatgtttcagcttttgca 25384179  T
Q  315 gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaa 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25384178 gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttatacaaa 25384125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 25798771 - 25798558
Alignment:
Q  20 taacacatacattgataaacatctaaaagaagaac-acatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatc 118  Q
    |||||||||||||||| || || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25798771 taacacatacattgattaatatgtaaaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatc 25798672  T
Q  119 tcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatcta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25798671 tcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcttttatgcattgaaccgttgcctcatgacttacttgattttcgtaagtatcta 25798572  T
Q  219 tgcttttataatat 232  Q
    |||| |||||||||    
T  25798571 tgctcttataatat 25798558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 25488382 - 25488161
Alignment:
Q  20 taacacatacattgataaacatctaaaagaagaac-acatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatc 118  Q
    ||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25488382 taacacatacattgataaatatgtaaaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatt 25488283  T
Q  119 tcacgtgtcaaacgaagcatgc----ggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagta 214  Q
    ||||||||||||||||||||||    ||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  25488282 tcacgtgtcaaacgaagcatgcatgcggacgcttctcttcatcttaagttctgttatgcgatgaaccgttgcctcatgacttacttgattttcgtaagta 25488183  T
Q  215 tctatgcttttataatattgaa 236  Q
    |||||||||| |||||||||||    
T  25488182 tctatgctttgataatattgaa 25488161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 25602836 - 25602698
Alignment:
Q  89 gcttctgaatcttccatgtatgaaagcatctcacgtgtcaaacgaagcatgcggatg-------cttctcttcatcttaagttcagttatgcgttgaacc 181  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||| |||||||||| ||||    
T  25602836 gcttctgaatctttcatgtatgaaagcatctcacgtgtcaaacgaagcatgcagattgcagacacttctcttcatcttaagttctgttatgcgttcaacc 25602737  T
Q  182 gttgcctcatgacttacttgattttcgtaagtatctatg 220  Q
    |||||||||||||  |||| |||||| ||||||||||||    
T  25602736 gttgcctcatgacaaactttattttcataagtatctatg 25602698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 25602696 - 25602609
Alignment:
Q  257 tctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcagcacatccatcgcaatttcctcaacaagtt 344  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  25602696 tctaatttagtaatttgttgatccaagtcaccaacataaagacgattcaaattttgcagcacatccattgcaatttcctcaacaagtt 25602609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 25389456 - 25389413
Alignment:
Q  393 attttttaaaaatcttatttttctaatagttaatcaaataacat 436  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  25389456 attttttaaaaatcttatttttctaatagtaaatcaaataacat 25389413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 533
Target Start/End: Complemental strand, 25383543 - 25383499
Alignment:
Q  489 tttcctctcttgttatctaatatacttgagaacttccctttttat 533  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||    
T  25383543 tttcctctcttattatctaatatacttgacaacttccctttttat 25383499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 533
Target Start/End: Complemental strand, 25645407 - 25645360
Alignment:
Q  489 tttcctctcttgttatctaata---tacttgagaacttccctttttat 533  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||||    
T  25645407 tttcctctcttgttatctaataatatacttgagaaattccctttttat 25645360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 25384122 - 25384082
Alignment:
Q  396 ttttaaaaatcttatttttctaatagttaatcaaataacat 436  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  25384122 ttttaaaaatcttaaatttccaatagttaatcaaataacat 25384082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 19096 - 19515
Alignment:
Q  16 tttgtaacacatacattgataaacatctaaaagaagaa-cacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaag 114  Q
    ||||||||||||||||| ||||| || ||||| ||||| || || |||||  ||||||||||||||||| |||||||||||||||||||||||||||||     
T  19096 tttgtaacacatacattaataaatatgtaaaaaaagaagcaaatttataacacaactaaaatagttttttataagcttctgaatcttccatgtatgaaaa 19195  T
Q  115 catctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  19196 catctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgtggaaccgttgactcatgacttacttaattttcgtaagta 19295  T
Q  215 tctatgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgca 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19296 tctatgcttttataatattgaagctgaagttgtgcaagttgctctagtatagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgca 19395  T
Q  315 gcacatccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaatatgaaaaaatatagacataattcattttttaaaaatcttattttt 414  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||    
T  19396 gcacatccatcgcaatttcctcaacaagttcagcttatgttctgtttgtacaaacatggaaaaatatagacatacttcattttttaaaaatctaattttt 19495  T
Q  415 ctaatagttaatcaaataac 434  Q
    ||||||||||||||||||||    
T  19496 ctaatagttaatcaaataac 19515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 38497 - 38866
Alignment:
Q  20 taacacatacattgataaacatctaaaagaagaac-acatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatc 118  Q
    |||||||| |||||||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38497 taacacatccattgataaatatgtaaaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatc 38596  T
Q  119 tcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatcta 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38597 tcacgtgtcaaacgaagcatgcggacgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatcta 38696  T
Q  219 tgcttttataatattgaagctgaagttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcagcac 318  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||           | | ||  |||    || ||||||||||||||||    
T  38697 tgcttttataatattgaagctgaagttgtgcaagttgctctaatttaataatttg-----------ctctaatttaatattgaatcaacttttgcagcac 38785  T
Q  319 atccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaatatgaaaaaatatagacataattcatttttt 399  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||| ||||||    
T  38786 acccatcgcaatttcctcaacaagttcagcttctgttctgtttgtacaaacatggaaaaatataaacatacttcttttttt 38866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 19031 - 19098
Alignment:
Q  16 tttgtaacacatacattgataaacatctaaaagaagaa-cacatctataatgcaactaaaatagtttt 82  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  19031 tttgtaacacatacattgataaacatgtaaaagaagaagcacatctataatgcaactaaaatagtttt 19098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0955 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: scaffold0955
Description:

Target: scaffold0955; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 45 - 399
Target Start/End: Complemental strand, 3918 - 3574
Alignment:
Q  45 aaagaagaac-acatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatctcacgtgtcaaacgaagcatgcgga 143  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3918 aaagaagaaccacatttataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagcatctcacgtgtcaaacgaagcatgtgga 3819  T
Q  144 tgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatctatgcttttataatattgaagctgaag 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3818 tgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatctatgcttttataatattgaagctgaag 3719  T
Q  244 ttgtgcaagttgctctagtttagtaatttgatgatccaagtcaccaacataaacacgattcaacttttgcagcacatccatcgcaatttcctcaacaagt 343  Q
    ||||||||||||||||| |||| |||||||           | | ||  |||    || |||||||||||||||||||||||||||||||||||||||||    
T  3718 ttgtgcaagttgctctaatttaataatttg-----------ctctaatttaatattgaatcaacttttgcagcacatccatcgcaatttcctcaacaagt 3630  T
Q  344 tcagcttctgttctgtttgtacaaatatgaaaaaatatagacataattcatttttt 399  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||| ||| ||||||    
T  3629 tcagcttctgttctgtttgtacaaacatggaaaaatataaacatacttcttttttt 3574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0955; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 3465 - 3418
Alignment:
Q  389 attcattttttaaaaatcttatttttctaatagttaatcaaataacat 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3465 attcattttttaaaaatcttatttttctaatagttaatcaaataacat 3418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 20592127 - 20591918
Alignment:
Q  18 tgtaacacatacattgataaacatctaaaagaagaa-cacatctataatgcaactaaaatagtttttcataagcttctgaatcttccatgtatgaaagca 116  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20592127 tgtaacacatacattgataaacatgtaaaagaagaagcacatctataatgcaactaaaatagtttt-cataagcttctgaatcttccatgtatgaaagca 20592029  T
Q  117 tctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttcagttatgcgttgaaccgttgcctcatgacttacttgattttcgtaagtatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| ||||||||| |||||||||||||||||||| ||||||||    
T  20592028 tctcacgtgtcaaacgaagcatgcggatgcttctcttcatcttaagttctattatacgttcaaccgttgcgtcatgacttacttgattttcataagtatc 20591929  T
Q  217 tatgcttttat 227  Q
    |||||||||||    
T  20591928 tatgcttttat 20591918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 16499164 - 16499236
Alignment:
Q  275 tgatccaagtcaccaacataaacacgattcaacttttgcagcacatccatcgcaatttcctcaacaagttcag 347  Q
    ||||| ||||||||||||||||| ||||| || |||| ||  |||||| ||||||||| ||||| ||||||||    
T  16499164 tgatctaagtcaccaacataaactcgatttaatttttccaatacatccttcgcaattttctcaagaagttcag 16499236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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