View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_50 (Length: 204)
Name: NF16149_low_50
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 43553000 - 43553174
Alignment:
| Q |
19 |
cttggtacacaccaccaggtggactaataccagcagcaaaagttacggtggcaattaaaacagccactaatacaatggtgtttcttgcatttagtaatgc |
118 |
Q |
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| T |
43553000 |
cttggtacacaccaccaggtggactaataccagcagcaaaagttacggtggcaattaaaacagccactaacacaatagtgtttcttgcatttagtaatgc |
43553099 |
T |
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| Q |
119 |
ctcttggtgcatctcatgatagtgtttcctcttagtatgattcacattttcaatttttcctttgttatgatgatg |
193 |
Q |
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| T |
43553100 |
ctcttggtgcatctcatgatagtgtttcctcttagtatgattcacattttcaatttttcctttgttatgatgatg |
43553174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 43549002 - 43549173
Alignment:
| Q |
19 |
cttggtacacaccaccaggtggactaataccagcagcaaaagttacggtggcaattaaaacagccactaatacaatggtgtttcttgcatttagtaatgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
43549002 |
cttggtacacaccaccaggtggactaataccagcagcaaaagttacagtagcaattaaaacagccactaacacaatagtgtttcttgcatttagtaatgc |
43549101 |
T |
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| Q |
119 |
ctcttggtgcatctcatgatagtgtttcctcttagtatgattcacattttcaatttttcctttgttatgatg |
190 |
Q |
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| T |
43549102 |
ctctttgtgcatctcatgatagtgtttcctcttagtatgattcacattttcaatttttcctttgttatgatg |
43549173 |
T |
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