View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_low_7 (Length: 528)
Name: NF16149_low_7
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Complemental strand, 44751183 - 44750685
Alignment:
| Q |
16 |
caactagtcctttgtacacaacatcagatacacagaatgatattggtactcctaaaagggagcttgtgacatgctatgctgaatcaactttgtccgaggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44751183 |
caactagtcctttgtacacaacatcagatacacagaatgatattggtactcctaaaagggagcttgtgacatgctatgctgaatcaactttgtccgaggt |
44751084 |
T |
|
| Q |
116 |
aatcgacaaggcggtcacaaaccatgttcatcgagtttgggtggttgatcaagagggtttgcttgttggtgttgtgtctctcactgatgtaatcagagtt |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44751083 |
aatcgacaaggcggtcgcaaaccatgttcatcgagtttgggtggttgatcaagagggtttgcttgttggtgttgtgtctctcactgatgtaatcagagtt |
44750984 |
T |
|
| Q |
216 |
ataaggcaatctatgttatcagatgcagatgcatgaatgtgtatgatacaagcaacaatgtgtgctatcttggagaaaatattgcagctatatgatcaat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44750983 |
ataaggcaatctatgttatcagatgcagatgcatgaatgtgtacgatacaagcaacaatgtgtgctatcttggagaaaatattgcagctatatgatcaat |
44750884 |
T |
|
| Q |
316 |
gttttgtttagtcaatatgtacagtctataatgttgttttaatacttgacaaaatatgaaatgctagcaggtttttgttaatacaattatcagtttttct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44750883 |
gttttgtttagtcaatatgtacagtctataatgttgttttaatacttgactaaatatgaaatgctagcaggtttttgttaatacaattatcagtttttct |
44750784 |
T |
|
| Q |
416 |
ttactgaagcatcatagatggaactttcaaattatagctagaactcttataaattggctcactatatatatttttatctcaaaacggttatatttttct |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44750783 |
ttactgaagcatcatagatggaactttcaaattatagctagaactcttataaattggctcactatatatatttttctctcaaaacggttatatttttct |
44750685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 44744543 - 44744323
Alignment:
| Q |
16 |
caactagtcctttgtacacaacatcagatacacagaatgatattggtactcctaaaagggagcttgtgacatgctatgctgaatcaactttgtccgaggt |
115 |
Q |
| |
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|||| |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
44744543 |
caacaagtcctttgtacacaacatctgatacacataatgatattggtactcctagaagggagcttgtgacatgccatgctgaataaactttgtccgaggt |
44744444 |
T |
|
| Q |
116 |
aatcgacaaggcggtcacaaaccatgttcatcgagtttgggtggttgatcaagagggtttgcttgttggtgttgtgtctctcactgatgtaatcagagtt |
215 |
Q |
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|||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
44744443 |
aatcaataaggcggtcgcaaaccatgttcatcgagtttgggtggttgatcaagagggtttgcttgtaggtgttgtgtctctcactgatgtcattagagtt |
44744344 |
T |
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| Q |
216 |
ataaggcaatctatgttatca |
236 |
Q |
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||||||||||| ||||||||| |
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| T |
44744343 |
ataaggcaatcaatgttatca |
44744323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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