View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_high_10 (Length: 606)

Name: NF1614_high_10
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_high_10
NF1614_high_10
[»] chr1 (5 HSPs)
chr1 (18-588)||(36578933-36579505)
chr1 (206-279)||(45481487-45481560)
chr1 (209-262)||(50849084-50849137)
chr1 (206-258)||(10480708-10480760)
chr1 (242-282)||(45418054-45418094)
[»] chr5 (4 HSPs)
chr5 (209-284)||(23118040-23118115)
chr5 (206-263)||(8882409-8882466)
chr5 (206-258)||(7216798-7216850)
chr5 (213-269)||(18981193-18981249)
[»] chr8 (3 HSPs)
chr8 (206-269)||(35682696-35682759)
chr8 (209-267)||(18422459-18422517)
chr8 (236-284)||(44975202-44975250)
[»] chr4 (6 HSPs)
chr4 (211-282)||(7371539-7371610)
chr4 (201-259)||(39842026-39842084)
chr4 (228-269)||(42756110-42756151)
chr4 (235-283)||(36071167-36071215)
chr4 (213-269)||(45029609-45029665)
chr4 (235-283)||(54677248-54677296)
[»] chr3 (6 HSPs)
chr3 (228-275)||(47440766-47440813)
chr3 (211-269)||(47039426-47039484)
chr3 (228-269)||(17507703-17507744)
chr3 (205-262)||(26973354-26973411)
chr3 (206-258)||(28130949-28131001)
chr3 (205-269)||(53633621-53633685)
[»] chr7 (5 HSPs)
chr7 (205-267)||(7388045-7388107)
chr7 (205-267)||(36755008-36755069)
chr7 (205-267)||(36760805-36760866)
chr7 (209-269)||(8879751-8879811)
chr7 (211-263)||(34000261-34000313)
[»] chr6 (5 HSPs)
chr6 (213-283)||(29431460-29431530)
chr6 (204-269)||(31140816-31140881)
chr6 (211-263)||(6470626-6470678)
chr6 (234-282)||(9973240-9973288)
chr6 (203-283)||(28592677-28592757)
[»] chr2 (2 HSPs)
chr2 (235-275)||(4238782-4238822)
chr2 (205-257)||(5676732-5676784)


Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Complemental strand, 36579505 - 36578933
Alignment:
Q  18 caacattatgtgttggcagtagcctggacaatagagctcattcctgtgttaagaatagctcaattattgaaaagacaagcacgatataattgttttggac 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36579505 caacattatgtgttggcagtagcctggacaataaagctcattcctgtgttaagaatagctcaattattgaaaagacaagtacgatataattgttttggac 36579406  T
Q  118 tagaccaaggttcaatccaacaaaatgagctttattgtctataatagcaacaca--gaaatcatttttcattatcaaatcatgactctctgtcctcgtga 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  36579405 tagaccaaggttcaatccaacaaaatgagctttattgtcaataatagcaacacaaagaaatcatttttcattatcaaatcatgactctctgtcctcgtga 36579306  T
Q  216 gcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcgatctccggacaccacccnnnnnnnntatcatgaccctttaatgcgaa 315  Q
    |||||| | ||||| |||||| ||||||||||||||| ||||| |||||||| |||||||||||||||||        ||||||||||||| ||||||||    
T  36579305 gcttaactaatatggtaatgataatccataatatatgcaaggtccgggattcaatctccggacaccacccaaaaaaaatatcatgacccttaaatgcgaa 36579206  T
Q  316 ttagatggtacataatatataaatcatgtcgggatccactctacaaagtaattttgtcacgtaaccattatttcatgaacgtctcctacaaaaggacatt 415  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36579205 ttagatggtacgtaatatacaaatcatgtcgggatccactctacaaagtaattttgtcacgtaaccattatttcatgcacgtctcctacaaaaggacatt 36579106  T
Q  416 gaactttagttaaatgtacattctcaactctgatcaaacctctagactctcctaaaactctcactaacttgagcgttagagtccttgcagatataacaac 515  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  36579105 gaactttagttaaaggtacattctcaactctgatcaaacctctagactctcctaaaactctcattgacttgagcgttagagtccttgcagatataacaac 36579006  T
Q  516 ttctttgaggagtaggcgatgtcctccaccgtctccattcaactttggttgttgcctcatgtccacttctgat 588  Q
     | |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  36579005 ctatttgaggagtaggcgatgtcctccaccgcctccattcaacattggttgttgcctcatgtccacttctgat 36578933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 45481487 - 45481560
Alignment:
Q  206 gtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcgatctccggaca 279  Q
    |||| |||||||||||||||| || ||| |||||| ||||||||||| ||||| |||| ||||| |||||||||    
T  45481487 gtccccgtgagcttaattcatttggtaaggacaatgcataatatatgcaaggtccggggttcgaactccggaca 45481560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 50849137 - 50849084
Alignment:
Q  209 ctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgg 262  Q
    ||||||||||||| |||  || |||||||||| |||||||||||||||||||||    
T  50849137 ctcgtgagcttaactcagttggtaatgacaatgcataatatatgtaaggttcgg 50849084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 10480708 - 10480760
Alignment:
Q  206 gtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggt 258  Q
    |||||||||||||||| ||| ||| ||| |||||| |||||||||||||||||    
T  10480708 gtcctcgtgagcttaactcagatggtaaggacaatgcataatatatgtaaggt 10480760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 45418094 - 45418054
Alignment:
Q  242 cataatatatgtaaggttcgggattcgatctccggacacca 282  Q
    ||||||||||| ||||||| |||||||| ||||||||||||    
T  45418094 cataatatatgcaaggttcaggattcgaactccggacacca 45418054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 23118115 - 23118040
Alignment:
Q  209 ctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcgatctccggacaccacc 284  Q
    ||||||||||||| |||  |||||| |||||| |||||||||||||||||| ||| ||||| ||| ||||||||||    
T  23118115 ctcgtgagcttaactcagttgataaggacaatgcataatatatgtaaggtttggggttcgaactctggacaccacc 23118040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 8882466 - 8882409
Alignment:
Q  206 gtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcggg 263  Q
    |||| ||||||||||| |||  ||||||||||| | ||||||||||||||||| ||||    
T  8882466 gtccccgtgagcttaactcagttgataatgacagtgcataatatatgtaaggtccggg 8882409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 7216798 - 7216850
Alignment:
Q  206 gtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggt 258  Q
    |||||||||||||||| |||| |||||| ||| ||  ||||||||||||||||    
T  7216798 gtcctcgtgagcttaactcatttgataaggacgatgaataatatatgtaaggt 7216850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 18981249 - 18981193
Alignment:
Q  213 tgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcga 269  Q
    ||||||||| ||| ||| |||  ||||| |||||||||||||||||||||| |||||    
T  18981249 tgagcttaactcaaatggtaagaacaatgcataatatatgtaaggttcggggttcga 18981193  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 35682759 - 35682696
Alignment:
Q  206 gtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcga 269  Q
    |||||||||||||||  |||  || ||  ||||||||||||||||||||||||||||| |||||    
T  35682759 gtcctcgtgagcttagctcagttggtacggacaatccataatatatgtaaggttcgggtttcga 35682696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 18422517 - 18422459
Alignment:
Q  209 ctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattc 267  Q
    ||||| |||||||||||  |||||   ||||| ||||||||||||||||||||||||||    
T  18422517 ctcgtaagcttaattcagttgatagaaacaatgcataatatatgtaaggttcgggattc 18422459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 44975202 - 44975250
Alignment:
Q  236 acaatccataatatatgtaaggttcgggattcgatctccggacaccacc 284  Q
    ||||| ||||||||||| ||||||||||||||||   ||||||||||||    
T  44975202 acaatgcataatatatgcaaggttcgggattcgaaacccggacaccacc 44975250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 7371610 - 7371539
Alignment:
Q  211 cgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcgatctccggacacca 282  Q
    ||||||||||| |||  |||||| |||||| ||||||||||| ||||| |||| ||||| | ||||||||||    
T  7371610 cgtgagcttaactcagttgataaggacaatacataatatatgcaaggtccggggttcgaaccccggacacca 7371539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 39842084 - 39842026
Alignment:
Q  201 tctctgtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggtt 259  Q
    ||||| ||||||||| ||||| |||  |||||| |||||| ||||||||||||||||||    
T  39842084 tctctatcctcgtgatcttaactcagttgataaggacaatgcataatatatgtaaggtt 39842026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 42756151 - 42756110
Alignment:
Q  228 tgataatgacaatccataatatatgtaaggttcgggattcga 269  Q
    |||||| |||||| ||||||||||| ||||||||||||||||    
T  42756151 tgataaggacaatgcataatatatgcaaggttcgggattcga 42756110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 36071167 - 36071215
Alignment:
Q  235 gacaatccataatatatgtaaggttcgggattcgatctccggacaccac 283  Q
    |||||| |||||||||||||||||||||| ||||| | |||| ||||||    
T  36071167 gacaatgcataatatatgtaaggttcggggttcgaacgccgggcaccac 36071215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 45029665 - 45029609
Alignment:
Q  213 tgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcga 269  Q
    ||||||||| |||| || ||| |||||| |||||||||||||||||| ||| |||||    
T  45029665 tgagcttaactcatttggtaaggacaatgcataatatatgtaaggtttggggttcga 45029609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 54677248 - 54677296
Alignment:
Q  235 gacaatccataatatatgtaaggttcgggattcgatctccggacaccac 283  Q
    |||||| |||||||||||||||||||| ||||| | |||||| ||||||    
T  54677248 gacaatgcataatatatgtaaggttcgagattcaaactccggccaccac 54677296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 47440766 - 47440813
Alignment:
Q  228 tgataatgacaatccataatatatgtaaggttcgggattcgatctccg 275  Q
    |||||| ||||||  ||||||||||||||||||||||||||| |||||    
T  47440766 tgataaggacaatatataatatatgtaaggttcgggattcgaactccg 47440813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 47039426 - 47039484
Alignment:
Q  211 cgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcga 269  Q
    ||||||||||| ||| ||||||| |||||| ||||||||||| || ||||||| |||||    
T  47039426 cgtgagcttaactcagatgataaggacaatgcataatatatgcaaagttcggggttcga 47039484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 17507744 - 17507703
Alignment:
Q  228 tgataatgacaatccataatatatgtaaggttcgggattcga 269  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||    
T  17507744 tgatattgacaatgcataatatatgcaaggttcgggattcga 17507703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 26973354 - 26973411
Alignment:
Q  205 tgtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgg 262  Q
    ||||||||||| ||||||| |  || ||| |||||| |||||||||||||||||||||    
T  26973354 tgtcctcgtgaacttaattaaattggtaaggacaatgcataatatatgtaaggttcgg 26973411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 28131001 - 28130949
Alignment:
Q  206 gtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggt 258  Q
    ||||||||||||||| |||| ||| ||| |||||| ||||||||||| |||||    
T  28131001 gtcctcgtgagcttagttcaaatggtaaggacaatgcataatatatgcaaggt 28130949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 53633685 - 53633621
Alignment:
Q  205 tgtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcga 269  Q
    ||||||||||||||||| |||  || ||| || ||| ||||||||||||||||| |||| |||||    
T  53633685 tgtcctcgtgagcttaactcagttggtaaggataatgcataatatatgtaaggtccggggttcga 53633621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 7388107 - 7388045
Alignment:
Q  205 tgtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattc 267  Q
    ||||||||||||||||| |||  || |   |||||| ||||||||||||||||||||||||||    
T  7388107 tgtcctcgtgagcttaactcagttggttgggacaatgcataatatatgtaaggttcgggattc 7388045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 36755008 - 36755069
Alignment:
Q  205 tgtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattc 267  Q
    ||||||||||||||||| |||  || ||  |||||| ||||||||||||||||||||||||||    
T  36755008 tgtcctcgtgagcttaactcagttggtag-gacaatgcataatatatgtaaggttcgggattc 36755069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 36760805 - 36760866
Alignment:
Q  205 tgtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattc 267  Q
    ||||||||||||||||| |||  || ||  |||||| ||||||||||||||||||||||||||    
T  36760805 tgtcctcgtgagcttaactcagttggtag-gacaatgcataatatatgtaaggttcgggattc 36760866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 8879811 - 8879751
Alignment:
Q  209 ctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcga 269  Q
    ||||||||||||| |||  || ||  |||||| ||||||||||| ||||||||||||||||    
T  8879811 ctcgtgagcttaactcagttggtatagacaatgcataatatatgcaaggttcgggattcga 8879751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 34000261 - 34000313
Alignment:
Q  211 cgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcggg 263  Q
    ||||||||||| |||  |||||| || ||| ||||||||||||||||||||||    
T  34000261 cgtgagcttaactcagttgataaggataatgcataatatatgtaaggttcggg 34000313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 29431460 - 29431530
Alignment:
Q  213 tgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcgatctccggacaccac 283  Q
    |||||||| ||||| |||||| |||||| |||||| ||||||||||  | | ||||||| |||||||||||    
T  29431460 tgagcttagttcatttgataaggacaatgcataatgtatgtaaggtctgaggttcgatccccggacaccac 29431530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 31140881 - 31140816
Alignment:
Q  204 ctgtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcga 269  Q
    |||||||||||||||||| |||  |||||| || |||  |||||||||| ||||||| ||||||||    
T  31140881 ctgtcctcgtgagcttaactcagctgataaagataatgtataatatatgcaaggttcaggattcga 31140816  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 6470678 - 6470626
Alignment:
Q  211 cgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcggg 263  Q
    ||||||||||| |||  |||||| |||||| ||||||||||||||| ||||||    
T  6470678 cgtgagcttaactcagttgataaagacaatgcataatatatgtaagtttcggg 6470626  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 9973240 - 9973288
Alignment:
Q  234 tgacaatccataatatatgtaaggttcgggattcgatctccggacacca 282  Q
    ||||||| |||||||||||||||||| ||| ||||| |||||| |||||    
T  9973240 tgacaatgcataatatatgtaaggtttggggttcgaactccggccacca 9973288  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 28592757 - 28592677
Alignment:
Q  203 tctgtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaaggttcgggattcgatctccggacaccac 283  Q
    |||||||||||||||||| ||||  ||  || |||||| |||||||||||||||||  ||| ||||| |  ||||||||||    
T  28592757 tctgtcctcgtgagcttagttcaattggcaaagacaatgcataatatatgtaaggtctggggttcgaacctcggacaccac 28592677  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 4238782 - 4238822
Alignment:
Q  235 gacaatccataatatatgtaaggttcgggattcgatctccg 275  Q
    |||||| |||||||||||||||||||||| ||||| |||||    
T  4238782 gacaatgcataatatatgtaaggttcggggttcgaactccg 4238822  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 5676732 - 5676784
Alignment:
Q  205 tgtcctcgtgagcttaattcatatgataatgacaatccataatatatgtaagg 257  Q
    ||||||||||||||||| |||  || |||||||||| ||||||||||| ||||    
T  5676732 tgtcctcgtgagcttaactcagttggtaatgacaatgcataatatatgcaagg 5676784  T

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