View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_100 (Length: 248)
Name: NF1614_high_100
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_100 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 68 - 241
Target Start/End: Original strand, 32649321 - 32649494
Alignment:
| Q |
68 |
aacacattaaatttaaccaccatgaacaacatgcatcctcaactttataatcggaatggcctgcatacaatgatattaaccatcaggaattgcataagga |
167 |
Q |
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| T |
32649321 |
aacacattaaatttaaccaccatgaacaacatgcatcctcaactttataatcggaatggcctgcatacatagatattaaccatcaggaattgcataagga |
32649420 |
T |
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| Q |
168 |
taacgattggcaggctatcaaactaattagttataatagaaagttctactccttgttctttattgcttcatctc |
241 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32649421 |
taacaattggcaggctatcaaactaattagttatagtagaaagttctactccttgttctttattgcttcatctc |
32649494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 32649220 - 32649281
Alignment:
| Q |
7 |
atgtaacgtagtgtgttttgttgtttcactaaacttatgtgacagtatatttagtcattaga |
68 |
Q |
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| T |
32649220 |
atgtagcgttgtgtgttttgttgtgtcactaaacttatgtgacagtatacttagtcattaga |
32649281 |
T |
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