View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_high_11 (Length: 589)

Name: NF1614_high_11
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_high_11
NF1614_high_11
[»] chr6 (5 HSPs)
chr6 (216-581)||(15056919-15057280)
chr6 (16-118)||(15056718-15056820)
chr6 (261-398)||(15057188-15057320)
chr6 (427-481)||(28606579-28606633)
chr6 (428-473)||(12430568-12430613)
[»] chr4 (5 HSPs)
chr4 (410-488)||(31529814-31529892)
chr4 (423-485)||(43404607-43404669)
chr4 (423-487)||(22435455-22435519)
chr4 (423-487)||(35297575-35297639)
chr4 (423-484)||(22435345-22435406)
[»] chr2 (3 HSPs)
chr2 (423-487)||(18182492-18182556)
chr2 (423-487)||(18182604-18182668)
chr2 (423-475)||(1355997-1356052)
[»] chr8 (3 HSPs)
chr8 (424-487)||(18183016-18183079)
chr8 (423-487)||(3647489-3647553)
chr8 (427-475)||(43417523-43417571)
[»] chr5 (5 HSPs)
chr5 (437-488)||(3137704-3137755)
chr5 (410-481)||(20986545-20986616)
chr5 (409-487)||(5396360-5396437)
chr5 (413-486)||(20986427-20986500)
chr5 (423-487)||(34394655-34394719)
[»] chr3 (6 HSPs)
chr3 (423-486)||(53299832-53299896)
chr3 (423-481)||(26960942-26961000)
chr3 (424-482)||(53299701-53299759)
chr3 (423-480)||(16205706-16205763)
chr3 (426-488)||(22616639-22616701)
chr3 (451-487)||(16205822-16205858)
[»] scaffold0020 (1 HSPs)
scaffold0020 (413-486)||(1629-1702)
[»] chr7 (4 HSPs)
chr7 (426-487)||(33491173-33491234)
chr7 (410-478)||(27385922-27385990)
chr7 (423-473)||(42494776-42494826)
chr7 (423-488)||(6980851-6980915)
[»] scaffold0031 (1 HSPs)
scaffold0031 (423-463)||(105390-105430)
[»] chr1 (1 HSPs)
chr1 (423-463)||(36774935-36774975)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 216 - 581
Target Start/End: Original strand, 15056919 - 15057280
Alignment:
Q  216 ctagttgggcctgaagaaaaggacgagatgttaggcttaatcatgtagggtgcagacacagagaatttcaggcatgacgaaatcaattacaccatgatca 315  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  15056919 ctagttgggcctgatgaaaaggacgagatattaggcttaatcatgtagggtgcagacacaaagaatttcaagcatgacgaaatcaattacaccatgatca 15057018  T
Q  316 gcgtcagccttgtcacaccacaaattaatttttacttcatatctttcaattctatgtatttaatctaggaacgataacaatcagaatttttggatccttt 415  Q
    ||      |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| | |||| |||||||  |||||||| || |||    
T  15057019 gc------cttgtcacaccacaaattaatttttacttcatctctttcaattctctatatttaatctagtagcgatgacaatcaagatttttgg-tcattt 15057111  T
Q  416 tgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccccatgtagggtg---acacaaagaatttc 512  Q
    || | | |||||| ||| ||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||| |||||||   ||||||||||||||    
T  15057112 tgtacacttgtgatattttggttggccaatgtcacatgacattgacaccccaatgtcaccaaagtgctaccccatatagggtgcagacacaaagaatttc 15057211  T
Q  513 aggcatgacaatatcaattacaccatgatcaaccttgttacaccacaaattaattttttacttcatctc 581  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15057212 aagcatgacgatatcaattacaccatgatcaaccttgttacaccacaaattaattttttacttcatctc 15057280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 15056718 - 15056820
Alignment:
Q  16 aatttcacttttatcatcacaaaaactcatgaaccaaatccatttgctatctgctagcacctcattggacttgactttcgaagtgtcttttgcaaacatc 115  Q
    |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| | |||||||| |||| ||||||||||||||| ||||    
T  15056718 aattccacttttatcatcacaaaaactcattaaccaagtccatttgctatctgctggcacctcgtcggacttgattttccaagtgtcttttgcaagcatc 15056817  T
Q  116 cgc 118  Q
    |||    
T  15056818 cgc 15056820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 261 - 398
Target Start/End: Original strand, 15057188 - 15057320
Alignment:
Q  261 tagggtgcagacacagagaatttcaggcatgacgaaatcaattacaccatgatcagcgtcagccttgtcacaccacaaattaatttt-tacttcatatct 359  Q
    ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |      ||||| |||||||||||||||||| |||||||| |||    
T  15057188 tagggtgcagacacaaagaatttcaagcatgacgatatcaattacaccatgatcaac------cttgttacaccacaaattaattttttacttcatctct 15057281  T
Q  360 ttcaattctatgtatttaatctaggaacgataacaatca 398  Q
    ||| ||||| ||||||||||| || ||| ||||||||||    
T  15057282 ttccattctctgtatttaatcaagtaacaataacaatca 15057320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 28606579 - 28606633
Alignment:
Q  427 gacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtg 481  Q
    |||||||||||||| |||| ||| ||||||||  ||||||||||||||| |||||    
T  28606579 gacattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtg 28606633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 473
Target Start/End: Complemental strand, 12430613 - 12430568
Alignment:
Q  428 acattgtggttggtcaatatcagatgacattaacaccccaatgtca 473  Q
    |||||||| ||||||||||||| ||||||||||||||  |||||||    
T  12430613 acattgtgattggtcaatatcacatgacattaacaccataatgtca 12430568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 488
Target Start/End: Original strand, 31529814 - 31529892
Alignment:
Q  410 tccttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacccc 488  Q
    |||||||||| | |||||||||||||||||  |||||||| |||| |||  |||| |||||||||||||||||||||||    
T  31529814 tccttttgcacacttgtgacattgtggttgaccaatatcacatgaaattggcacctcaatgtcaccaaagtgctacccc 31529892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 43404607 - 43404669
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctac 485  Q
    ||||||||||||||||| ||||| ||||||||||||  ||||| |||||||| ||||||||||    
T  43404607 ttgtgacattgtggttgatcaatgtcagatgacattggcaccctaatgtcactaaagtgctac 43404669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 487
Target Start/End: Original strand, 22435455 - 22435519
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 487  Q
    ||||||||||||||||||||||| ||  || |||||  ||||||||||||||| |||||||||||    
T  22435455 ttgtgacattgtggttggtcaatgtcgcataacattggcaccccaatgtcacccaagtgctaccc 22435519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 487
Target Start/End: Original strand, 35297575 - 35297639
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 487  Q
    |||| ||||||||||||   ||||||| |||||||| |||||||||| ||||| |||||||||||    
T  35297575 ttgtaacattgtggttgactaatatcacatgacattgacaccccaatatcacccaagtgctaccc 35297639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 484
Target Start/End: Complemental strand, 22435406 - 22435345
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgcta 484  Q
    |||||||||||||||| | |||| ||| ||||||||  ||||||||| ||||| ||||||||    
T  22435406 ttgtgacattgtggtttgccaatgtcacatgacattggcaccccaatatcacccaagtgcta 22435345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 423 - 487
Target Start/End: Complemental strand, 18182556 - 18182492
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 487  Q
    |||||||||||||||||| |||| ||| ||||||||  ||||||||||||||| |||||||||||    
T  18182556 ttgtgacattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtgctaccc 18182492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 487
Target Start/End: Original strand, 18182604 - 18182668
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 487  Q
    |||||||||||||||| | |||| ||| ||||||||  ||||||||||||||| |||||||||||    
T  18182604 ttgtgacattgtggtttgccaatgtcacatgacattggcaccccaatgtcacccaagtgctaccc 18182668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 475
Target Start/End: Original strand, 1355997 - 1356052
Alignment:
Q  423 ttgtgacattgtggttggtcaatatc---agatgacattaacaccccaatgtcacc 475  Q
    |||||||||||||||||| |||| ||   |||||||||| ||||||||||||||||    
T  1355997 ttgtgacattgtggttggccaatgtcgtcagatgacattgacaccccaatgtcacc 1356052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 487
Target Start/End: Complemental strand, 18183079 - 18183016
Alignment:
Q  424 tgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 487  Q
    |||||||||||||||||||||| |||  |||||||  |||| ||||||||||||||||||||||    
T  18183079 tgtgacattgtggttggtcaatgtcatgtgacattggcacctcaatgtcaccaaagtgctaccc 18183016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 487
Target Start/End: Original strand, 3647489 - 3647553
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 487  Q
    ||||| |||||||||||| |||| ||| ||||||||  ||||||||||||||| |||||||||||    
T  3647489 ttgtgtcattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtgctaccc 3647553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 475
Target Start/End: Complemental strand, 43417571 - 43417523
Alignment:
Q  427 gacattgtggttggtcaatatcagatgacattaacaccccaatgtcacc 475  Q
    |||||||||||| | |||||||| |||||||| |||| |||||||||||    
T  43417571 gacattgtggttagccaatatcacatgacattgacactccaatgtcacc 43417523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 488
Target Start/End: Complemental strand, 3137755 - 3137704
Alignment:
Q  437 ttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacccc 488  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  3137755 ttggccaatatcacatgacattgacaccccaatgtcaccaaagtgctacccc 3137704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 481
Target Start/End: Original strand, 20986545 - 20986616
Alignment:
Q  410 tccttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtg 481  Q
    |||||||||| | || ||||||||| |||||||||||||| ||||||||  || ||||||||||||||||||    
T  20986545 tccttttgcacacttatgacattgtagttggtcaatatcacatgacattggcatcccaatgtcaccaaagtg 20986616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 487
Target Start/End: Original strand, 5396360 - 5396437
Alignment:
Q  409 atccttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 487  Q
    ||||||||||| | |||||| ||||||||||  |||| |||  |||||||  |||||||||||||||||| ||||||||    
T  5396360 atccttttgcacacttgtgatattgtggttgaccaatgtcac-tgacattggcaccccaatgtcaccaaattgctaccc 5396437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 486
Target Start/End: Complemental strand, 20986500 - 20986427
Alignment:
Q  413 ttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacc 486  Q
    ||||||| | |||||||||||||||||  |||| ||| || |||||  ||| |||||||||||||| |||||||    
T  20986500 ttttgcacacttgtgacattgtggttgaccaatgtcacataacatttgcacgccaatgtcaccaaaatgctacc 20986427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 487
Target Start/End: Complemental strand, 34394719 - 34394655
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 487  Q
    |||||||||||||||||  |||| ||| || |||||  ||||||||||||||| || ||||||||    
T  34394719 ttgtgacattgtggttgaccaatgtcacatcacattggcaccccaatgtcacccaaatgctaccc 34394655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 486
Target Start/End: Original strand, 53299832 - 53299896
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaaca-ccccaatgtcaccaaagtgctacc 486  Q
    |||||||||||||||||| |||| |||  ||||||| ||| ||||||||||||||||||||||||    
T  53299832 ttgtgacattgtggttggccaatgtcacgtgacattgacacccccaatgtcaccaaagtgctacc 53299896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 26960942 - 26961000
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtg 481  Q
    |||||||||||||||||| |||| ||| |||||||| ||||| |||||||||| |||||    
T  26960942 ttgtgacattgtggttggccaatgtcacatgacattgacacctcaatgtcacccaagtg 26961000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 482
Target Start/End: Complemental strand, 53299759 - 53299701
Alignment:
Q  424 tgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgc 482  Q
    ||||||||||||||||| |||| |||  ||||||| ||||||||||||||||| |||||    
T  53299759 tgtgacattgtggttggccaatgtcatgtgacattgacaccccaatgtcaccatagtgc 53299701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 423 - 480
Target Start/End: Complemental strand, 16205763 - 16205706
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagt 480  Q
    ||||||||||||||||| ||||| ||| ||||||||  ||||||||||||||| ||||    
T  16205763 ttgtgacattgtggttgatcaatgtcacatgacattggcaccccaatgtcacccaagt 16205706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 22616639 - 22616701
Alignment:
Q  426 tgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacccc 488  Q
    |||||||||||||| ||||| ||| |||||||| | ||| || ||||||| ||||||||||||    
T  22616639 tgacattgtggttgatcaatgtcacatgacattgatacctcagtgtcacccaagtgctacccc 22616701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 487
Target Start/End: Original strand, 16205822 - 16205858
Alignment:
Q  451 atgacattaacaccccaatgtcaccaaagtgctaccc 487  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  16205822 atgacattaacaccccaatatcacccaagtgctaccc 16205858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 486
Target Start/End: Complemental strand, 1702 - 1629
Alignment:
Q  413 ttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacc 486  Q
    |||| ||||||||| || |||||| ||| |||| ||| |||||||| ||||||||| ||| |||||||||||||    
T  1702 ttttacatatttgtaactttgtggatggccaatgtcacatgacattgacaccccaacgtcgccaaagtgctacc 1629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 426 - 487
Target Start/End: Complemental strand, 33491234 - 33491173
Alignment:
Q  426 tgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctaccc 487  Q
    ||||||||||||||| |||| ||| ||||||||  ||||||||| ||| |||||||||||||    
T  33491234 tgacattgtggttggccaatgtcacatgacattggcaccccaatatcatcaaagtgctaccc 33491173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 478
Target Start/End: Original strand, 27385922 - 27385990
Alignment:
Q  410 tccttttgcatatttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaa 478  Q
    |||||||||| | |||||||||||||||||| |||  ||| ||||||||  |||| |||||||||||||    
T  27385922 tccttttgcacacttgtgacattgtggttggccaacgtcacatgacattggcacctcaatgtcaccaaa 27385990  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 473
Target Start/End: Complemental strand, 42494826 - 42494776
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtca 473  Q
    |||||||||||||||| | |||| ||| |||||||||| ||||||||||||    
T  42494826 ttgtgacattgtggtttgccaatgtcacatgacattaataccccaatgtca 42494776  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 488
Target Start/End: Complemental strand, 6980915 - 6980851
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacaccccaatgtcaccaaagtgctacccc 488  Q
    |||||||||||||||||| ||||  ||  |||||||  ||||||||||||||| ||||||||||||    
T  6980915 ttgtgacattgtggttggccaatgacatgtgacattggcaccccaatgtcacc-aagtgctacccc 6980851  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 463
Target Start/End: Complemental strand, 105430 - 105390
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacac 463  Q
    ||||||||||||| ||||||||| ||| |||||||||||||    
T  105430 ttgtgacattgtgattggtcaatgtcacatgacattaacac 105390  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 463
Target Start/End: Original strand, 36774935 - 36774975
Alignment:
Q  423 ttgtgacattgtggttggtcaatatcagatgacattaacac 463  Q
    |||| |||||||||||||||||||||| |||||||| ||||    
T  36774935 ttgtaacattgtggttggtcaatatcacatgacattgacac 36774975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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