View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_110 (Length: 238)
Name: NF1614_high_110
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_110 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 36913201 - 36913430
Alignment:
| Q |
1 |
catataacatggccatttaaacaaataagttacatcaaataatcaagaacatcttgaaccaatgttgggtcacatttcattcgtctcggcagcttgccct |
100 |
Q |
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| T |
36913201 |
catataacatgtccatttaaacaaataagttacatcaaataatcaagaacatcttgaaccaatgttgggtcacatttcattcgtctcggcagcttgcctt |
36913300 |
T |
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| Q |
101 |
gacgttccagcatttctttcttcatgtgaggaatactatacttgttggaacctcttgctttcatgatttcaatcatacacaattgcaaacttaaaaatat |
200 |
Q |
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| T |
36913301 |
gacgttccagcatttctttcttcatgtgaggaatactatacttgttggaacctcttgctttcatgatttcaatcatacacaattgcaaacttaaaaatat |
36913400 |
T |
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| Q |
201 |
acgatttgagagcaccaccgaatattcttc |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36913401 |
acgatttgagagcaccaccgaatattcttc |
36913430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 11166498 - 11166727
Alignment:
| Q |
1 |
catataacatggccatttaaacaaataagttacatcaaataatcaagaacatcttgaaccaatgttgggtcacatttcattcgtctcggcagcttgccct |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
11166498 |
catataacatgtccatttaaacaaataagttacatcaaataatcaagaacatcttgaaccaatgttgggtcacatttcattcgtctcggcaacttgcctt |
11166597 |
T |
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| Q |
101 |
gacgttccagcatttctttcttcatgtgaggaatactatacttgttggaacctcttgctttcatgatttcaatcatacacaattgcaaacttaaaaatat |
200 |
Q |
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| T |
11166598 |
gacgttccagcatttctttcttcatgtgaggaatactatacttgttggaacctcttgctttcatgatttcaatcatacacaattgcaaacttaaaaataa |
11166697 |
T |
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| Q |
201 |
acgatttgagagcaccaccgaatattcttc |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11166698 |
acgatttgagagcaccaccgaatattcttc |
11166727 |
T |
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