View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_113 (Length: 237)
Name: NF1614_high_113
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_113 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 20402882 - 20402662
Alignment:
| Q |
1 |
taacagaaaaggattaatttgtcccttcggaaacatccaataaattctaagaaaaggaataacttgactaacataagtaatattaagggatctaatcgtg |
100 |
Q |
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| T |
20402882 |
taacagaaaaggattaatttgtcccttcggggacatctgataaattctgataaaaggattaacttgactaacataagtaaaattaagggatctaatcgtg |
20402783 |
T |
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| Q |
101 |
acaaatattttttaagggatcaaaatgaaaacactaaataagttaatggaccaagtatccaatttagcacattttttaagtaatttcttagatgaaaatt |
200 |
Q |
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| T |
20402782 |
acaaatattttttaagggatcaaaatgaaaacactaaataagttcagggaccaagtatccaatttagcacattttttaagtaatgtcttagatgaaaatt |
20402683 |
T |
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| Q |
201 |
cggtgtgttgtactatggtat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
20402682 |
cggtgtgttgtactatggtat |
20402662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 20371489 - 20371542
Alignment:
| Q |
152 |
caagtatccaatttagcacattttttaagtaatttcttagatgaaaattcggtg |
205 |
Q |
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|||||||||||||||||| |||||| ||| ||| |||||||| |||||| |||| |
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| T |
20371489 |
caagtatccaatttagcatatttttaaaggaatgtcttagataaaaatttggtg |
20371542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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