View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_115 (Length: 235)
Name: NF1614_high_115
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_115 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 41240772 - 41240552
Alignment:
| Q |
15 |
cattgtacaagattggtatatttaaatgtatctaataataaattgagtggtaggtttccaaataaggctttaacaagattgaaatatcttacgaacttag |
114 |
Q |
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| T |
41240772 |
cattgtacaagattggtatatttaaatgtatccaataatcaattgagtggtaggtttccaaataaggctttaacaagattgaaatatcttacgaacttag |
41240673 |
T |
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| Q |
115 |
atgtatctatgaataatttttctactagttacatggctccaattagtattaagttagagagcaatacaatacaaccaacacctagtcctttaactaacaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41240672 |
atgtatctatgaataatttttctactagttacatggctccaattagtattaagttagagagcaatacaatacaaccaacacctagtcctttaactaacaa |
41240573 |
T |
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| Q |
215 |
aacacctaaaaatgcaacttc |
235 |
Q |
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||||||||||||||||||||| |
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| T |
41240572 |
aacacctaaaaatgcaacttc |
41240552 |
T |
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