View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_120 (Length: 227)
Name: NF1614_high_120
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_120 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 32632589 - 32632364
Alignment:
| Q |
6 |
aataccataacctatgataaatccaatnnnnnnngtacacattaatgattcaaatcaaacaagtaaaaaggagtctaggtaatcctaattgaagaatttg |
105 |
Q |
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| T |
32632589 |
aataccataacctatgataaattcaataaaaaa-gtacacattaatgattcacatcaaacaacttaaaaggagtctaggtgttcctaattgaagaatttg |
32632491 |
T |
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| Q |
106 |
aaacttcaagtatgaaatgcatatgtttgtttcgagaatgcatgtaatattgttttacatatacatcatgttcgaaatatgatttag-----gtacatca |
200 |
Q |
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| T |
32632490 |
aaacttcaagtatgaaatgcatatgtttgtttcgagaatgcatgtaatattgttttacacatacgtcgtgttcgaaatatgatttagttcatatacatca |
32632391 |
T |
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| Q |
201 |
tcaacaagataaagatttttcacactt |
227 |
Q |
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| T |
32632390 |
tcaacaagataaagatttttcacactt |
32632364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 32613868 - 32613783
Alignment:
| Q |
41 |
tacacattaatgattcaaatcaaacaagtaaaaaggagtctaggtaatcctaattgaagaatttgaaacttcaagtatgaaatgcat |
127 |
Q |
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| T |
32613868 |
tacacattaagaattcaaataaaa-aactataaaggagttatggtaattctaattgaagaatttaaaacttcatgtatgaaatgcat |
32613783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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