View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_125 (Length: 216)
Name: NF1614_high_125
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_125 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 7415559 - 7415359
Alignment:
| Q |
1 |
aattgctaaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaagctagagaggattgcaaagttgatggttacgatattcccaaa |
100 |
Q |
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| T |
7415559 |
aattgctaaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaagctagagaggattgcaaagttgatggttacgatattcccaaa |
7415460 |
T |
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| Q |
101 |
gggactatagttcttgtcaatacttggacaattgcaagagattctgaggtttgggagaatccatatgaatttatgcctgagaggtttcttggtaaagata |
200 |
Q |
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| T |
7415459 |
gggactatagttcttgtcaatacttggacaattgcaagagattctgaggtttgggagaatccatatgaatttatgcctgagaggtttcttggtaaagata |
7415360 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
7415359 |
t |
7415359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 7423218 - 7423024
Alignment:
| Q |
1 |
aattgctaaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaagctagagaggattgcaaagttgatggttacgatattcccaaa |
100 |
Q |
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|||||||||||||||||||||||| ||||| | |||||||| ||||||||| |||||||||| ||||||||||| ||||||||||| ||||| || ||| |
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| T |
7423218 |
aattgctaaagaaacaatgaggcttcatcctgcagcaccattgttagtgccaagagaagctagtgaggattgcaatgttgatggttatgatatcccaaaa |
7423119 |
T |
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| Q |
101 |
gggactatagttcttgtcaatacttggacaattgcaagagattctgaggtttgggagaatccatatgaatttatgcctgagaggtttcttggtaa |
195 |
Q |
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|||||| || |||||||||||||||||||||||| ||||||| || | |||||||| ||||||||||| ||||| |||||||||||| ||||||| |
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| T |
7423118 |
gggactctaattcttgtcaatacttggacaattggaagagatcctaatgtttgggacaatccatatgagtttatacctgagaggtttattggtaa |
7423024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 7429627 - 7429441
Alignment:
| Q |
1 |
aattgctaaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaagctagagaggattgcaaagttgatggttacgatattcccaaa |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||| ||||| | ||||||||| ||||||||| ||| ||||||| ||||||||||| ||||| || ||| |
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| T |
7429627 |
aattgctaaagaaacaatgaggcttcatcctgtgacaccaatgttagtgccaagagaagctactgagaattgcaatgttgatggttatgatataccaaaa |
7429528 |
T |
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| Q |
101 |
gggactatagttcttgtcaatacttggacaattgcaagagattctgaggtttgggagaatccatatgaatttatgcctgagaggttt |
187 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| || ||||||||| |
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| T |
7429527 |
gggactatgattcttgtcaatacttggacaattggaagagattctgatagttgggataatccatatgaatttataccagagaggttt |
7429441 |
T |
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