View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_127 (Length: 206)
Name: NF1614_high_127
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_127 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 15418688 - 15418489
Alignment:
| Q |
1 |
actgttcttaaagatatgatgtttttccactctatgcaacgactaagacatgcaagtttagtccatgctacttgatatatgtatgtaaaataatagaaaa |
100 |
Q |
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| T |
15418688 |
actgttcttaaagatatgatgtttttccactgtatgcaacgactaagacatgcaagtttagtccatgctacttgatatatgtatgtaaaataatagaaaa |
15418589 |
T |
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| Q |
101 |
tcatagatgataattcatagttttattttatctttgttcatatcagaaaattatagtatataaacacaattaaggaagccttaaataacatattcttcga |
200 |
Q |
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| T |
15418588 |
tcatagatgataattcatagttttatttcatctttgttcatatcgaaaaattatagtatataaacacaattaaggaagccttaaatgacattctcttcga |
15418489 |
T |
|
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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 33450704 - 33450605
Alignment:
| Q |
83 |
atgtaaaataatagaaaatcatagatgataattcatagttttattttatctttgttcatatcagaaaattatagtatataaacacaattaaggaagcctt |
182 |
Q |
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| T |
33450704 |
atgtaaaataatagaaaatcaaagatgataatatatagttttattccatcttggttcaaatcaaaaaattatagtacataagcataatcaaggaagcctt |
33450605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 35048961 - 35049089
Alignment:
| Q |
39 |
acgactaagacatgcaagtttagtccatgctacttgatatatgtatgtaaaataatagaaaatcatagatgataattcatagttttattttatctttgtt |
138 |
Q |
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| T |
35048961 |
acgactaagacatgagagtttagtccatgctacttgatatatgcatgt-------tagaacaccatagatgataatttaaagtgttatttcggcttcgtt |
35049053 |
T |
|
| Q |
139 |
catatcagaaaattatagtatataaacacaattaag |
174 |
Q |
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| T |
35049054 |
taaatcagacaattatagtacataaacacaattaag |
35049089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 18776036 - 18776141
Alignment:
| Q |
74 |
gatatatgtatgtaaaataatagaaaatcatagatgataattcatagttttattttatctttgttcatatcagaaaattatagtatataaacacaattaa |
173 |
Q |
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| T |
18776036 |
gatatatgcatctaaaataatagaaaaccatagatgataatttatagttttatttcatatgtgttcaaattgggaaattatagtacataaatacaattac |
18776135 |
T |
|
| Q |
174 |
ggaagc |
179 |
Q |
| |
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|||||| |
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|
| T |
18776136 |
ggaagc |
18776141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 7293904 - 7293951
Alignment:
| Q |
86 |
taaaataatagaaaatcatagatgataattcatagttttattttatct |
133 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||||| |||| |
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| T |
7293904 |
taaaacaatagaaaatcatagatgataatttatagttttatttgatct |
7293951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 45297542 - 45297392
Alignment:
| Q |
33 |
tatgcaacgactaagacatgcaagtttagtccatgctacttgatatatgtatgtaaaataatagaaaatcatagatgataattcatagttttattttatc |
132 |
Q |
| |
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||||| || |||||||| || |||||| || || |||||||||||||| || ||||| ||||||| | || | ||||||||| ||| |||||||| ||| |
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| T |
45297542 |
tatgccacaactaagacgtgaaagttttgttcacactacttgatatatgcatataaaacaatagaataccacatatgataatttataattttatttcatc |
45297443 |
T |
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| Q |
133 |
tttgttcatatcagaaaattatagtatataaacacaattaaggaagcctta |
183 |
Q |
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|| ||| | ||||| ||||||| || ||||||||||||||||||| |||| |
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| T |
45297442 |
ttcgtttaaatcaggcaattataatacataaacacaattaaggaagtctta |
45297392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 7891544 - 7891459
Alignment:
| Q |
92 |
aatagaaaatcatagatgataattcatagttttattttatctttgttcatatcagaaaattatagtatataaacacaattaaggaa |
177 |
Q |
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||||||||| |||| |||||||| |||||||||||| ||||||||| | ||| || |||||||||| |||||||||||||||||| |
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| T |
7891544 |
aatagaaaacgataggtgataatttatagttttatttcatctttgtttaaatcggacaattatagtacataaacacaattaaggaa |
7891459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 37234238 - 37234188
Alignment:
| Q |
83 |
atgtaaaataatagaaaatcatagatgataattcatagttttattttatct |
133 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||||||||||||| |||| |
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| T |
37234238 |
atgtaaaacaatagaaaacgatagatgataattcatagttttatttcatct |
37234188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 52075890 - 52075979
Alignment:
| Q |
92 |
aatagaaaatcatagatgataattcatagttttattttatctttgttcatatcagaaaattatagtatataaacacaattaaggaagcct |
181 |
Q |
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||||||||| ||||||||||||| ||||||| |||| ||||| ||||| ||||| ||||||| || ||| |||| ||||| ||||||| |
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| T |
52075890 |
aatagaaaacgatagatgataatttatagtttaatttcatcttcgttcaactcagacaattatattacatatacacgattaaagaagcct |
52075979 |
T |
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