View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_high_14 (Length: 542)
Name: NF1614_high_14
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_14 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 542
Target Start/End: Complemental strand, 26053937 - 26053393
Alignment:
| Q |
13 |
aaaataaagaattgagagaacatgtgatgaaaacatacaactttggaggtccttaaaagnnnnnnngaattcctagcaaaacgataaagagtacagtgct |
112 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |
|
|
| T |
26053937 |
aaaataaagaattggtagaacatgtgatgaaaacatacaactttggaggtccttaaaagaaaaaaagaattcctagcaaaacgataaagagtacggtgat |
26053838 |
T |
|
| Q |
113 |
aaagaacaatcgttaaccttataacttctaatgtctttagtctcccctggctctggactcacagttgcatgctttaactttcctttttctacgaaacaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26053837 |
aaagaacaatcgttaaccttataacttctaatgtctttagtctcccctggctctggactcacagttgcatgctttaactttcctttttctacaaaacaaa |
26053738 |
T |
|
| Q |
213 |
agttgcaaaggaaaaattagaaataaaattgaaatttggtggacatgcatccacttgtttctcaaacgttgagaatgtcacttagcctgttcctctagaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26053737 |
agttgcaaaggaaaaattagaaataaaattgaaatttggtggacatgcatccacttgtttctcaaacgttgagaatgtcatttagcctgttcctctagaa |
26053638 |
T |
|
| Q |
313 |
ttgcaataataagttgaatacctgcagcactgattcttccaacatgatgcaaagcattagtaagtgccgattttccaacatttggaagcccaattaacat |
412 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26053637 |
ttgcaataataacttgaatacctgcagcactgattctcccaacatgatgcaaagcattagtaagtgccgattttccaacatttggaagcccaattaacat |
26053538 |
T |
|
| Q |
413 |
tactgttgcagtatatttattagcttgatcagttctcctcaactttcccacctgacgttgtataaggcttaggaactgtttaaaaca------------- |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
26053537 |
tactgttgcagtatatttattagcttgatccgttctcctcaactttcccacctgccgttgtataaggcttaggaactgtctaaaacaaaaggtctttatt |
26053438 |
T |
|
| Q |
500 |
--taaattagttcatgaacagataaaaagaaagagggcgagaaaa |
542 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26053437 |
agtaaattagtttatgaacagataaaaagaaagagggcgagaaaa |
26053393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University