View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_20 (Length: 487)
Name: NF1614_high_20
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Complemental strand, 1687605 - 1687146
Alignment:
| Q |
11 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
110 |
Q |
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| T |
1687605 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
1687506 |
T |
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| Q |
111 |
catctttctcatcatgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaaactttacgtcgactttcaacaatggccgttcata |
210 |
Q |
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| T |
1687505 |
catctttctcatcatgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaaactttacattgactttcaacaatggccgttcata |
1687406 |
T |
|
| Q |
211 |
aagaactaattctcctgattttttacggacatttctcttattttcctttcgatgtannnnnnnattcgaggaaataatcttcttgattatagttttcatt |
310 |
Q |
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| T |
1687405 |
aagaactaattctcctgattttttacggacatttctcttatttgcctttcgatgtatttttttatttgaggaaataatcttcttgattatagttttcatt |
1687306 |
T |
|
| Q |
311 |
tttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaagggt |
410 |
Q |
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| T |
1687305 |
tttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaagggt |
1687206 |
T |
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| Q |
411 |
tcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattg |
470 |
Q |
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| T |
1687205 |
tcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattg |
1687146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 8 - 470
Target Start/End: Complemental strand, 41918729 - 41918270
Alignment:
| Q |
8 |
tgagatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttat |
107 |
Q |
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||||||||||||||||||||||| |||||||| || ||| |||||| ||| || ||| ||| |||||||||| |||||||||||||||||||| |
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| T |
41918729 |
tgagatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttat |
41918630 |
T |
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| Q |
108 |
gttcatctttctcatcatgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaaactttacgtcgactttcaacaatggccgttc |
207 |
Q |
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| T |
41918629 |
gttcatcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaagcattacttcaacttctgctgatggtcgatt |
41918530 |
T |
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| Q |
208 |
ataaagaactaattctcctgattttttacggacatttctcttattttcctttcgatgtannnnnnnattcgaggaaataatcttcttgattatagttttc |
307 |
Q |
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| T |
41918529 |
ataaagaactaattcccctgactttttgcggacatctctcttatttttctttcgatgcatttttttcttcaaggaaataattttcttgattaaagatctc |
41918430 |
T |
|
| Q |
308 |
atttttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaag |
407 |
Q |
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|||||||||||| |||||| ||||||||||| | | || | | |||||||||| |||||| ||| |||| |||||||||| ||||||||||| | |
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| T |
41918429 |
atttttcggctggttgtag---aatttccttctgcccaaaattgtgtccaacattttctcttcgtaacaaaactttttgatctctggccctttgcaaacg |
41918333 |
T |
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| Q |
408 |
ggttcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattg |
470 |
Q |
| |
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|| |||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||| |
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| T |
41918332 |
ggggcaagagttttaccaaacttattctttctcttctaactcttttccttttacacattattg |
41918270 |
T |
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