View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_22 (Length: 473)
Name: NF1614_high_22
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 178 - 393
Target Start/End: Complemental strand, 35233707 - 35233492
Alignment:
| Q |
178 |
agatttcatcgtttatgtgaaatacatttcttaagcgtcaacccacacgacttccacctagctagagagtgaatgttagagattgtgtgaacaagaagtt |
277 |
Q |
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| T |
35233707 |
agatttcatcgtttatgtgaaatatatttcttaagtgtgaacccacacgacttccacctagttagagagtgaatgttagagattgtgtgaacaagaagtt |
35233608 |
T |
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| Q |
278 |
gatatgaccgaaaagaattatctcttgttgattttggccaaaccactagactatatgtgctaatagtaccgtactgctataagaaaaatgatatttgcac |
377 |
Q |
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| T |
35233607 |
gatatgatggaaaaggattatctcctgttgatttcggccaaaccactagactatatgtgctaatagtaccgtactgctataagaaaaatgatatttgcac |
35233508 |
T |
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| Q |
378 |
aaccattttacgataa |
393 |
Q |
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|||||||||||||||| |
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| T |
35233507 |
aaccattttacgataa |
35233492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 35233883 - 35233751
Alignment:
| Q |
17 |
ataaacaatttcttacacttattcattcaaatgaaacaaataaaatacgaatattgaccatctaaaaacaactcttatcttttcttttactttggtgtct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35233883 |
ataaacaatttcttacacttattcattcaaatgaaacaaataaaatacgaatattgaccatctaaaaacaactcttatcttttcttttactttggtgtct |
35233784 |
T |
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| Q |
117 |
aatcatcaaatttcaatcaataaaaaatgttag |
149 |
Q |
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| T |
35233783 |
aatcatcaaatttcaatcaataaaaaatgttag |
35233751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 16829729 - 16829701
Alignment:
| Q |
358 |
aagaaaaatgatatttgcacaaccatttt |
386 |
Q |
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| T |
16829729 |
aagaaaaatgatatttgcacaaccatttt |
16829701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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