View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_3 (Length: 772)
Name: NF1614_high_3
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 11 - 757
Target Start/End: Original strand, 37020042 - 37020795
Alignment:
| Q |
11 |
aatactcaacaaatccatggtnnnnnnngtaattattgcttacttgcaatctttgatgcctcttcatcttcaagcagtgcagcaaatccatttatatgct |
110 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37020042 |
aatactcaacaaatccatggtaaaaaaagtaattattgcttacttgcaatctttgatgcctcttcatcttcaagcagtgcagcaaatccatttatatgct |
37020141 |
T |
|
| Q |
111 |
tattgtaagagtacatcactgtttcctttgccttctcatggctgttataaaaacacaactattttagtactactcaacttctctagtgtcttagaatatg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37020142 |
tattgtaagagtacatcactgtttcctttgccttctcatggctgttacaaaaacacaactattttagcactactcaacttctctagtgtcttagaatatg |
37020241 |
T |
|
| Q |
211 |
taatataaaattaatagactatgtaccttcctaagattgaagcaagtaaatcataatgtgaatttgtggccgagtcaagatcatcaagggagggatttgg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37020242 |
taatataaaattaatagactatgtaccttcctaagattgaagcaagtaaatcataatgtgaatttgtggctgagtcaagatcatcaagggagggatttgg |
37020341 |
T |
|
| Q |
311 |
accatgagaatgtcctcccaagtatacaatatatgtctacaaaagagaaaacaattatgaaatatataccgtttatatttaaaagaaaaatgtgaattct |
410 |
Q |
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| T |
37020342 |
accatgagaatgtcctcccaagtatacaatatatgtctac-aaagagaaaacaattatgaaatatatactgtttatatttaaaagcaaaatgtgaattct |
37020440 |
T |
|
| Q |
411 |
aagaatttggatattaagactatagaagtaactgtatgaatgagt---ataagaagggactgagcaaatgcttacctttttaagggcatcagtgtgttct |
507 |
Q |
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| T |
37020441 |
aagaatttggatattaagactatagaggtaactgtatgaatgagtttaataagaagggattgagcacatgcttacctttctaagggcatcagtgtgttct |
37020540 |
T |
|
| Q |
508 |
agcaagaaactgcaaagaatgaatgatgatagaaaaagtttggtaatatgatatgacattgtttttctttagggttttgaagtgtttataatggcttcta |
607 |
Q |
| |
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|
| T |
37020541 |
agcaagaaactgcaaagaatgaatgatgatagaaaaagtttggtaatatgatatgacattgtttttttttagggttttgaagtgtttataatggcttcta |
37020640 |
T |
|
| Q |
608 |
gtgcttatgtttatata--------nnnnnnnnnnnnnntggtttttggagtcaaatgtgattgtcttgccaacttttcctctttcccataaatatttta |
699 |
Q |
| |
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||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37020641 |
gtgct--tgtttatataacacacacacacacacacacactggttt-tggagtcaaatgtgattgtcttgccaacttttcctctttcccataaatatttta |
37020737 |
T |
|
| Q |
700 |
ggtgcactgccttcacaaatagagcacccttgcacaaactaaaataggaaatgatcaa |
757 |
Q |
| |
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|
| T |
37020738 |
ggtgcactgccttcacaaatagagcacccttgcacaaactaaaatgggaaatgatcaa |
37020795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 343
Target Start/End: Original strand, 31113572 - 31113684
Alignment:
| Q |
231 |
atgtaccttcctaagattgaagcaagtaaatcataatgtgaatttgtggccgagtcaagatcatcaagggagggatttggaccatgagaatgtcctccca |
330 |
Q |
| |
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||||||||||| || |||||| | |||||||||||||| ||| ||| || | ||||| ||| || ||| ||| |||||||||| |||||| |||||| |
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| T |
31113572 |
atgtaccttcccaatattgaacccagtaaatcataatgagaagatgtagcagtttcaaggtcaacagaggaaggagttggaccatgtgaatgtgctccca |
31113671 |
T |
|
| Q |
331 |
agtatacaatata |
343 |
Q |
| |
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|||| |||||||| |
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|
| T |
31113672 |
agtacacaatata |
31113684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 234 - 340
Target Start/End: Original strand, 31150031 - 31150137
Alignment:
| Q |
234 |
taccttcctaagattgaagcaagtaaatcataatgtgaatttgtggccgagtcaagatcatcaagggagggatttggaccatgagaatgtcctcccaagt |
333 |
Q |
| |
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|||||||| ||||||||| | |||||||||||||| |||| ||| || | ||||| ||| || ||| ||| |||||||||| |||| ||||||||| |
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| T |
31150031 |
taccttcccaagattgaacccagtaaatcataatgagaatatgtagcagtttcaaggtcaacagaggaaggagttggaccatgtacatgtgctcccaagt |
31150130 |
T |
|
| Q |
334 |
atacaat |
340 |
Q |
| |
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||||||| |
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|
| T |
31150131 |
atacaat |
31150137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 234 - 340
Target Start/End: Original strand, 31168323 - 31168429
Alignment:
| Q |
234 |
taccttcctaagattgaagcaagtaaatcataatgtgaatttgtggccgagtcaagatcatcaagggagggatttggaccatgagaatgtcctcccaagt |
333 |
Q |
| |
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|||||||| ||||||||| | |||||||||||||| |||| ||| || | ||||| ||| || ||| ||| |||||||||| |||| ||||||||| |
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| T |
31168323 |
taccttcccaagattgaacccagtaaatcataatgagaatatgtagcagtttcaaggtcaacagaggaaggagttggaccatgtacatgtgctcccaagt |
31168422 |
T |
|
| Q |
334 |
atacaat |
340 |
Q |
| |
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||||||| |
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|
| T |
31168423 |
atacaat |
31168429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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