View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_high_33 (Length: 415)

Name: NF1614_high_33
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_high_33
NF1614_high_33
[»] chr4 (9 HSPs)
chr4 (101-415)||(24225663-24225974)
chr4 (210-415)||(54147992-54148197)
chr4 (89-180)||(24225617-24225708)
chr4 (301-415)||(16871458-16871573)
chr4 (101-180)||(16871050-16871132)
chr4 (101-170)||(16871086-16871156)
chr4 (130-180)||(16871045-16871097)
chr4 (105-180)||(16871125-16871208)
chr4 (132-180)||(16870899-16870947)
[»] scaffold0499 (1 HSPs)
scaffold0499 (304-414)||(7045-7155)
[»] chr5 (14 HSPs)
chr5 (301-415)||(24137404-24137519)
chr5 (113-184)||(27314808-27314879)
chr5 (105-173)||(24137194-24137258)
chr5 (122-180)||(24137177-24137235)
chr5 (130-179)||(9511927-9511976)
chr5 (123-180)||(11335334-11335391)
chr5 (301-361)||(9512269-9512329)
chr5 (108-177)||(9512013-9512082)
chr5 (328-407)||(11320618-11320698)
chr5 (101-156)||(11335324-11335379)
chr5 (353-404)||(27315112-27315163)
chr5 (130-179)||(24137122-24137171)
chr5 (101-145)||(9511932-9511976)
chr5 (210-254)||(9512202-9512246)
[»] chr6 (17 HSPs)
chr6 (304-414)||(13098053-13098163)
chr6 (105-177)||(22860818-22860893)
chr6 (301-415)||(28063188-28063303)
chr6 (210-288)||(28063350-28063428)
chr6 (101-177)||(9291150-9291227)
chr6 (105-180)||(9291111-9291188)
chr6 (117-180)||(22860760-22860825)
chr6 (105-180)||(22860927-22861003)
chr6 (349-415)||(18984354-18984420)
chr6 (306-415)||(21862377-21862487)
chr6 (305-415)||(33424169-33424279)
chr6 (210-260)||(33424299-33424349)
chr6 (101-180)||(22860778-22860861)
chr6 (330-415)||(9290829-9290915)
chr6 (134-180)||(9291181-9291228)
chr6 (117-180)||(22860906-22860968)
chr6 (132-165)||(18984142-18984175)
[»] chr1 (20 HSPs)
chr1 (304-415)||(11993440-11993550)
chr1 (304-415)||(2071719-2071832)
chr1 (316-415)||(2075249-2075350)
chr1 (101-188)||(11993223-11993309)
chr1 (99-177)||(12177171-12177249)
chr1 (323-415)||(3774505-3774598)
chr1 (102-177)||(15629862-15629938)
chr1 (105-180)||(15629822-15629900)
chr1 (101-159)||(12177155-12177213)
chr1 (329-406)||(15629549-15629627)
chr1 (101-180)||(3775108-3775183)
chr1 (117-180)||(9168209-9168273)
chr1 (101-183)||(12177095-12177179)
chr1 (125-188)||(370460-370523)
chr1 (307-358)||(370565-370616)
chr1 (337-415)||(10354204-10354282)
chr1 (101-149)||(3775073-3775119)
chr1 (104-164)||(9168191-9168252)
chr1 (130-170)||(15629903-15629944)
chr1 (114-170)||(9168295-9168351)
[»] chr7 (30 HSPs)
chr7 (301-415)||(3902050-3902164)
chr7 (301-415)||(3889558-3889672)
chr7 (101-165)||(44338572-44338636)
chr7 (301-415)||(46963253-46963368)
chr7 (217-287)||(21814171-21814241)
chr7 (301-415)||(24486665-24486778)
chr7 (112-188)||(24486927-24487003)
chr7 (301-415)||(44338857-44338972)
chr7 (313-403)||(17921400-17921490)
chr7 (117-179)||(21813953-21814016)
chr7 (301-357)||(3889301-3889357)
chr7 (304-415)||(3890011-3890122)
chr7 (304-415)||(15614439-15614551)
chr7 (100-162)||(6532147-6532207)
chr7 (132-177)||(26403127-26403172)
chr7 (132-180)||(46963689-46963737)
chr7 (99-180)||(6532114-6532191)
chr7 (101-173)||(21813972-21814040)
chr7 (133-180)||(44338570-44338617)
chr7 (117-180)||(44338647-44338710)
chr7 (101-180)||(46963648-46963734)
chr7 (210-284)||(24486829-24486902)
chr7 (101-139)||(24486942-24486980)
chr7 (114-180)||(24486969-24487035)
chr7 (373-415)||(26403382-26403424)
chr7 (304-357)||(3901796-3901849)
chr7 (99-155)||(8574427-8574481)
chr7 (148-177)||(44338644-44338673)
chr7 (99-180)||(11828470-11828553)
chr7 (130-180)||(46963534-46963588)
[»] chr8 (15 HSPs)
chr8 (327-415)||(5616763-5616851)
chr8 (101-165)||(20242249-20242313)
chr8 (101-165)||(20250847-20250911)
chr8 (301-415)||(20242534-20242649)
chr8 (301-415)||(20250511-20250626)
chr8 (133-180)||(20242247-20242294)
chr8 (117-180)||(20242324-20242387)
chr8 (117-180)||(20250773-20250836)
chr8 (133-180)||(20250866-20250913)
chr8 (324-398)||(16578989-16579062)
chr8 (127-161)||(16579198-16579232)
chr8 (127-161)||(16583943-16583977)
chr8 (148-177)||(20242321-20242350)
chr8 (148-177)||(20250810-20250839)
chr8 (129-165)||(16579280-16579316)
[»] chr3 (6 HSPs)
chr3 (327-415)||(22821048-22821136)
chr3 (217-287)||(16462711-16462781)
chr3 (130-180)||(42530811-42530861)
chr3 (101-156)||(42530816-42530871)
chr3 (121-174)||(42530879-42530933)
chr3 (350-415)||(34338082-34338147)
[»] chr2 (17 HSPs)
chr2 (101-180)||(38583938-38584017)
chr2 (301-415)||(8986734-8986849)
chr2 (117-180)||(38583971-38584035)
chr2 (99-187)||(29409336-29409426)
chr2 (301-415)||(38583679-38583794)
chr2 (301-400)||(20593611-20593709)
chr2 (301-415)||(32290962-32291076)
chr2 (105-180)||(32290694-32290771)
chr2 (101-154)||(38583930-38583982)
chr2 (101-180)||(38584006-38584091)
chr2 (124-180)||(38584045-38584102)
chr2 (132-180)||(8986368-8986416)
chr2 (130-180)||(8986514-8986568)
chr2 (307-415)||(42633125-42633233)
chr2 (301-415)||(1172950-1173065)
chr2 (105-176)||(32290800-32290868)
chr2 (101-178)||(8986371-8986455)
[»] scaffold0025 (1 HSPs)
scaffold0025 (327-396)||(154697-154766)
[»] scaffold0007 (1 HSPs)
scaffold0007 (132-165)||(14716-14749)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 101 - 415
Target Start/End: Original strand, 24225663 - 24225974
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctgtttggttgnnnnnnnnnnnn 200  Q
    ||||||||||||||| |||| |||| |  | |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||                 
T  24225663 ttgattcttctgattcattgcactttttcctcttttgattcttctgattgattgcatttctcccccttttgattcttctgtttggtt----ctctctctc 24225758  T
Q  201 nnnnnnnattggttgtttctccctaccgattcttgtttggtttattttgaaatggttcttatgttt-ggatggttactctctttggctgattggtggttt 299  Q
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||     
T  24225759 tctctctattggttgtttctccctaccgattcttgtttggtttaatttgaaatggttcttatgttttggatggttactctctttggttgattggtggttc 24225858  T
Q  300 ctgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24225859 ctgctgctcttcattgattatgttatcagctgatttggtttattttcgaggttaatttgtaatgagcttcaaacttagtaagctttaacttcaggggtag 24225958  T
Q  400 tgttagaagtttatat 415  Q
    |||| |||||||||||    
T  24225959 tgttcgaagtttatat 24225974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 210 - 415
Target Start/End: Original strand, 54147992 - 54148197
Alignment:
Q  210 tggttgtttctccctaccgattcttgtttggtttattttgaaatggttcttatgtttggatggttactctctttggctgattggtggtttctgctgctct 309  Q
    |||||| ||||||||||| ||| |||||||||||| ||||||||||||||| |  ||||||  || ||||||||||||||||| |||||  |||||||||    
T  54147992 tggttgcttctccctaccaatttttgtttggtttagtttgaaatggttcttctacttggataatttctctctttggctgattgatggttcttgctgctct 54148091  T
Q  310 tcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagt 409  Q
    ||||| |||||  ||  |||| |||||||||||||||| |||||||||||||  ||||| || |||||||||||| ||||| ||||||||||||| ||||    
T  54148092 tcattcgttatactacaagctaatttggtttatttttggggttaatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttaaaagt 54148191  T
Q  410 ttatat 415  Q
    ||||||    
T  54148192 ttatat 54148197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 24225617 - 24225708
Alignment:
Q  89 catttctcattattgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||| |||||||||||| |||| ||||||| || ||||||||||||||||||||||||||| | || |||||||||||||||    
T  24225617 catttctcattattcattcttctgattcattgcacttctcccctttttgattcttctgattcattgcactttttcctcttttgattcttctg 24225708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 16871458 - 16871573
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttga-ggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    ||||||||| |||||||| || |  |||||||||||||||||||||   |||||||||||||  || || || |||||||||||| ||||| ||||||||    
T  16871458 tgctgctctccattggttttgctgacagctgatttggtttatttttcttggttaatttgtaacaagtttaaagcttagtaagcttcagcttgaggggtag 16871557  T
Q  400 tgttagaagtttatat 415  Q
    |||||||| |||||||    
T  16871558 tgttagaactttatat 16871573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 16871050 - 16871132
Alignment:
Q  101 ttgattcttctgattg-attgtacttctctccc-ttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||| |||| ||||||| ||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  16871050 ttgattcttctgattgcattgcacttctccccccttttgattcttctgattgcattgcacttctcccacttttggttcttctg 16871132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 16871086 - 16871156
Alignment:
Q  101 ttgattcttctgattg-attgtacttctctcccttttgattcttctgattcattgcacttctccccctttt 170  Q
    |||||||||||||||| |||| ||||||| | |||||| ||||||||||| ||||||||||||||||||||    
T  16871086 ttgattcttctgattgcattgcacttctcccacttttggttcttctgattgattgcacttctccccctttt 16871156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 16871045 - 16871097
Alignment:
Q  130 cccttttgattcttctgatt-cattgcacttct-cccccttttgattcttctg 180  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  16871045 cccttttgattcttctgattgcattgcacttctccccccttttgattcttctg 16871097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 16871125 - 16871208
Alignment:
Q  105 ttcttctgattgattgtacttctctccctttt--gattcttctgatt-----cattgcacttctc-ccccttttgattcttctg 180  Q
    |||||||||||||||| ||||||| |||||||  ||||| |||||||     ||||||||||||| ||||||||||||||||||    
T  16871125 ttcttctgattgattgcacttctcccccttttttgattcgtctgattgattgcattgcacttctctccccttttgattcttctg 16871208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 16870899 - 16870947
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||||| |||||| |||||| ||| ||| ||||||||    
T  16870899 cttttgattcttctgattgattgcatttctccacctattggttcttctg 16870947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 414
Target Start/End: Complemental strand, 7155 - 7045
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtt 403  Q
    |||||| ||||| |||||  || |||||||||||||||||||  |||||||||||||| |||||| || |||||||||||||||||| ||||||||||||    
T  7155 tgctctccattgattatgccatgagctgatttggtttattttcaaggttaatttgtaacgagcttaaaccttagtaagctttagcttaaggggtagtgtt 7056  T
Q  404 agaagtttata 414  Q
    |||||||||||    
T  7055 agaagtttata 7045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 24137404 - 24137519
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgagg-ttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||||||||||| || || |||||||||||||||||||||  || |||||||||||  ||||| || |||||||||||||||||| ||||||||    
T  24137404 tgctgctcttcattggttctgctagcagctgatttggtttatttttctgggttaatttgtaacaagcttaaagcttagtaagctttagcttgaggggtag 24137503  T
Q  400 tgttagaagtttatat 415  Q
    |||||||| |||||||    
T  24137504 tgttagaactttatat 24137519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 27314808 - 27314879
Alignment:
Q  113 attgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctgtttg 184  Q
    ||||||| |||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||| |||||    
T  27314808 attgattatacttctctcccttttgatttttgtgattgattgcacttctccccattttgattcttcggtttg 27314879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 24137194 - 24137258
Alignment:
Q  105 ttcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgat 173  Q
    |||||||||||||||||| ||||| |||||||||||||||||    |||||||||||||| ||||||||    
T  24137194 ttcttctgattgattgtatttctcccccttttgattcttctg----attgcacttctcccacttttgat 24137258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 24137177 - 24137235
Alignment:
Q  122 acttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||| |||||||| ||||||||||| |||| | |||||||||||||||||||||||    
T  24137177 acttctcccccttttggttcttctgattgattgtatttctcccccttttgattcttctg 24137235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 9511927 - 9511976
Alignment:
Q  130 cccttttgattcttctgattcattgcacttctcccccttttgattcttct 179  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  9511927 cccttttgattcttctgattgattgcacttctccccatattgattcttct 9511976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 11335391 - 11335334
Alignment:
Q  123 cttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||| |||||||||||||| ||||| ||| ||||||||||||| ||||||||||||    
T  11335391 cttctcccccttttgattcttttgattgattacacttctccccctattgattcttctg 11335334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 9512269 - 9512329
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaa 361  Q
    ||||||||||||||||||||| ||  |||| |||||||||||||| | |||||||||||||    
T  9512269 tgctgctcttcattggttatgctacgagctaatttggtttattttcggggttaatttgtaa 9512329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 9512013 - 9512082
Alignment:
Q  108 ttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattctt 177  Q
    ||||||||||||| |||||||    ||||| ||||||| ||| |||||| ||||||||||||||||||||    
T  9512013 ttctgattgattgcacttctccttgttttggttcttctcattgattgcatttctcccccttttgattctt 9512082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 11320698 - 11320618
Alignment:
Q  328 gctgatttggtttatttttgagg-ttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaa 407  Q
    ||||||||| |||||||||  || |||||||||||  ||||| || |||||||||||| ||||| | ||||||||||||||    
T  11320698 gctgatttgatttatttttttgggttaatttgtaacaagcttaaagcttagtaagcttcagcttgatgggtagtgttagaa 11320618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 11335379 - 11335324
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgca 156  Q
    ||||||||| |||||||||  ||||||| |||| ||||||||||||||| ||||||    
T  11335379 ttgattcttttgattgattacacttctccccctattgattcttctgattgattgca 11335324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 27315112 - 27315163
Alignment:
Q  353 aatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtta 404  Q
    |||||||||  ||||| ||||||||||||||||| ||| |||||||||||||    
T  27315112 aatttgtaacaagcttaaaacttagtaagctttaccttgaggggtagtgtta 27315163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 24137122 - 24137171
Alignment:
Q  130 cccttttgattcttctgattcattgcacttctcccccttttgattcttct 179  Q
    |||||||| ||||||| ||  ||||||||||||||||||||| |||||||    
T  24137122 cccttttggttcttctaatagattgcacttctcccccttttggttcttct 24137171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 9511932 - 9511976
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttct 145  Q
    |||||||||||||||||||| ||||||| || | |||||||||||    
T  9511932 ttgattcttctgattgattgcacttctccccatattgattcttct 9511976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 9512202 - 9512246
Alignment:
Q  210 tggttgtttctccctaccgattcttgtttggtttattttgaaatg 254  Q
    |||||| |||| ||||||||||||||||||||||| || ||||||    
T  9512202 tggttgcttcttcctaccgattcttgtttggtttagttcgaaatg 9512246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 304 - 414
Target Start/End: Original strand, 13098053 - 13098163
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtt 403  Q
    |||||||||||| |||||  || |||||||||||||||||||   ||||||||||||| |||||| || |||||||||| ||||||| ||||||||||||    
T  13098053 tgctcttcattgattatgccatgagctgatttggtttattttcagggttaatttgtaacgagcttaaaccttagtaagccttagcttaaggggtagtgtt 13098152  T
Q  404 agaagtttata 414  Q
    |||||||||||    
T  13098153 agaagtttata 13098163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 22860818 - 22860893
Alignment:
Q  105 ttcttctgattgattgtacttctctccc--ttttgattcttctgattc-attgcacttctcccccttttgattctt 177  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||| ||||||||||||||||| |||||||||    
T  22860818 ttcttctgattgattgcacttctctcccctttttgattcttctgattccattgcacttctccccctattgattctt 22860893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 28063303 - 28063188
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttattttt-gaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||   |||||||||||||  ||||| || |||||||| ||| | ||| ||||| ||    
T  28063303 tgctgctctctattggttatgctatcagctgatttggtttatttttctgggttaatttgtaacaagcttaaagcttagtaaacttcatcttgaggggaag 28063204  T
Q  400 tgttagaagtttatat 415  Q
    |||||||| |||||||    
T  28063203 tgttagaactttatat 28063188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 28063428 - 28063350
Alignment:
Q  210 tggttgtttctccctaccgattcttgtttggtttattttgaaatggttcttatgtttggatggttactctctttggctg 288  Q
    |||||| |||||||||| ||| ||||||||||||| ||||||||||||||| || ||||||| || |||||||||||||    
T  28063428 tggttgcttctccctactgatgcttgtttggtttagtttgaaatggttcttctgcttggatgatttctctctttggctg 28063350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 9291227 - 9291150
Alignment:
Q  101 ttgattcttctgattgattgtacttctctccc-ttttgattcttctgattcattgcacttctcccccttttgattctt 177  Q
    |||||||||||||||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||| | ||||||||||    
T  9291227 ttgattcttctgattgattgcacttctccccccttttggttcttctgattgattgcacttctccctcctttgattctt 9291150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 9291188 - 9291111
Alignment:
Q  105 ttcttctgattgattgtacttctctcccttttgattcttctgatt-cattgcacttctccccc-ttttgattcttctg 180  Q
    |||||||||||||||| ||||||| | | |||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  9291188 ttcttctgattgattgcacttctccctcctttgattcttttgattgcattgcacttctccccctttttgattcttctg 9291111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 22860760 - 22860825
Alignment:
Q  117 attgtacttctctcccttttgattcttctgatt-cattgcacttct-cccccttttgattcttctg 180  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  22860760 attgcacttctctcccttttgattcttctgattgcattgcacttctccccccttttggttcttctg 22860825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 22860927 - 22861003
Alignment:
Q  105 ttcttctgattgattgtacttctctcccttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    |||||| ||||||||| | ||||| |||||||| ||||||||||| ||||||| |||||||||||||| ||||||||    
T  22860927 ttcttccgattgattgcatttctcccccttttggttcttctgattgcattgcatttctcccccttttggttcttctg 22861003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 18984354 - 18984420
Alignment:
Q  349 ggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    |||||||||||||  ||||| || |||||||||||||||||| |||||| ||||||||| |||||||    
T  18984354 ggttaatttgtaacaagcttaaaccttagtaagctttagcttgaggggtggtgttagaattttatat 18984420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 21862377 - 21862487
Alignment:
Q  306 ctcttcattggttatgttatcagctgatttggtttatttttg-aggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtta 404  Q
    |||| |||||||| || || ||||||||||||||||| |||  ||||||||||||||  ||||| ||  |||||| |||| ||||| ||||| |||||||    
T  21862377 ctctccattggttttgctaacagctgatttggtttatatttctaggttaatttgtaacaagcttaaagtttagtatgcttcagcttgaggggaagtgtta 21862476  T
Q  405 gaagtttatat 415  Q
    ||| |||||||    
T  21862477 gaactttatat 21862487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 415
Target Start/End: Complemental strand, 33424279 - 33424169
Alignment:
Q  305 gctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtta 404  Q
    |||||||||||||| || ||  |||| ||||||||||||||   | |||||||||||  | ||| || |||||||||||| | ||| |||||||||||||    
T  33424279 gctcttcattggttgtgctacgagctaatttggtttattttctggattaatttgtaacaaacttaaagcttagtaagcttcaacttgaggggtagtgtta 33424180  T
Q  405 gaagtttatat 415  Q
    ||| |||||||    
T  33424179 gaactttatat 33424169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 33424349 - 33424299
Alignment:
Q  210 tggttgtttctccctaccgattcttgtttggtttattttgaaatggttctt 260  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  33424349 tggttgcttctccttaccgattcttgtttggtttagtttgaaatggttctt 33424299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 180
Target Start/End: Original strand, 22860778 - 22860861
Alignment:
Q  101 ttgattcttctgattg-attgtacttctctccc-ttttgattcttctgattcattgcact--tctcccccttttgattcttctg 180  Q
    |||||||||||||||| |||| ||||||| ||| ||||| ||||||||||| ||||||||  ||||||| ||||||||||||||    
T  22860778 ttgattcttctgattgcattgcacttctccccccttttggttcttctgattgattgcacttctctcccctttttgattcttctg 22860861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 415
Target Start/End: Complemental strand, 9290915 - 9290829
Alignment:
Q  330 tgatttggtttatttttg-aggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    |||||||||||||||||  ||||||||||||||  ||||| || ||| |||| ||| ||||||||| ||| |||||||| |||||||    
T  9290915 tgatttggtttatttttttaggttaatttgtaacaagcttaaagcttggtaaacttcagcttcaggagtaatgttagaactttatat 9290829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 9291228 - 9291181
Alignment:
Q  134 tttgattcttctgattcattgcacttctc-ccccttttgattcttctg 180  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  9291228 tttgattcttctgattgattgcacttctccccccttttggttcttctg 9291181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 22860906 - 22860968
Alignment:
Q  117 attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||||| |||||||| |||||| |||| |||||| |||||||||||||| ||||||||    
T  22860906 attgcacttctc-cccttttggttcttccgattgattgcatttctcccccttttggttcttctg 22860968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 18984142 - 18984175
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccc 165  Q
    |||||||||||||||||| |||||||||||||||    
T  18984142 cttttgattcttctgattgattgcacttctcccc 18984175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 415
Target Start/End: Original strand, 11993440 - 11993550
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtt 403  Q
    |||||||||||||||||| |||||||||||||||||||||||    |||||||| |||  ||||| || |||| ||||||||| ||| ||||||||||||    
T  11993440 tgctcttcattggttatgctatcagctgatttggtttattttctttgttaattt-taacaagcttaaatcttaataagctttaacttgaggggtagtgtt 11993538  T
Q  404 agaagtttatat 415  Q
    ||||||||||||    
T  11993539 agaagtttatat 11993550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 2071832 - 2071719
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggtt-aatttgtaatgagcttcaaa-cttagtaagctttagcttcaggggtagtg 401  Q
    |||||| |||| |||||| ||||| ||||||| ||||||||||  |||| |||||||||  ||||| ||  |||||||||||||||||| ||||||||||    
T  2071832 tgctctccatttgttatgctatcaactgatttagtttatttttatggtttaatttgtaacaagcttaaacgcttagtaagctttagcttgaggggtagtg 2071733  T
Q  402 ttagaagtttatat 415  Q
    ||| ||||||||||    
T  2071732 ttacaagtttatat 2071719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 2075350 - 2075249
Alignment:
Q  316 gttatgttatcagctgatttggtttatttttgaggtt-aatttgtaatgagcttcaaa-cttagtaagctttagcttcaggggtagtgttagaagtttat 413  Q
    |||||| ||||| ||||||| ||||||||||  |||| |||||||||  ||||| ||  |||||||||||||||||| ||||||||||||| ||||||||    
T  2075350 gttatgctatcaactgatttagtttatttttatggtttaatttgtaacaagcttaaacgcttagtaagctttagcttgaggggtagtgttacaagtttat 2075251  T
Q  414 at 415  Q
    ||    
T  2075250 at 2075249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 11993223 - 11993309
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttct-cccccttttgattcttctgtttggttg 188  Q
    ||||||||||| ||| |||| |||||||||  | ||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  11993223 ttgattcttctaattaattggacttctctc--tattgattcttctgattgatttcacttctccccccttttgattcttctctttggttg 11993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 12177249 - 12177171
Alignment:
Q  99 tattgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattctt 177  Q
    ||||||||||  |||||||||  ||||||| ||||||||||| |||||||| |||||||||||   |||||||||||||    
T  12177249 tattgattctcttgattgatttcacttctcccccttttgattattctgattgattgcacttcttttccttttgattctt 12177171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 3774598 - 3774505
Alignment:
Q  323 tatcagctgatttggtttatttttgagg-ttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    |||||| |||| ||||||||||||  || |||||||||||  ||| | || |||||||||||||| ||| ||||||| ||||||||||||||||    
T  3774598 tatcagttgatatggtttatttttctgggttaatttgtaacaagcataaagcttagtaagctttaacttgaggggtaatgttagaagtttatat 3774505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 15629938 - 15629862
Alignment:
Q  102 tgattcttctgattg-attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattctt 177  Q
    ||||||||||||||| |||| ||||||| |||||||  ||||| ||||| |||||||||||||| | ||||||||||    
T  15629938 tgattcttctgattgcattgcacttctccccctttttgttcttttgattgattgcacttctccctcctttgattctt 15629862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 15629900 - 15629822
Alignment:
Q  105 ttcttctgattgattgtacttctctcccttttgattcttctgatt-cattgcacttctccccc--ttttgattcttctg 180  Q
    ||||| |||||||||| ||||||| | | |||||||||| ||||| |||||||||||||||||  ||||||||||||||    
T  15629900 ttcttttgattgattgcacttctccctcctttgattcttttgattgcattgcacttctcccccttttttgattcttctg 15629822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 12177213 - 12177155
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcactt 159  Q
    |||||| ||||||||||||| |||||| | ||||||||||||| ||||| |||||||||    
T  12177213 ttgattattctgattgattgcacttcttttccttttgattcttatgattgattgcactt 12177155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 406
Target Start/End: Complemental strand, 15629627 - 15629549
Alignment:
Q  329 ctgatttggtttatttttgag-gttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttaga 406  Q
    ||||||| ||||||||||  | ||||||||||||  ||||| || |||||||||||| ||||| |||||||||||||||    
T  15629627 ctgatttagtttatttttctgagttaatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttaga 15629549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 3775183 - 3775108
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||||| ||||||||||  ||||||  ||||||||||||| ||||| |||||  |||||||| ||||||||||||||    
T  3775183 ttgattcttttgattgattg--cttctcctccttttgattcttttgattgattgc--ttctccccattttgattcttctg 3775108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 9168273 - 9168209
Alignment:
Q  117 attgtacttctctcccttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||| | ||||||| |||||||| ||| |||||||||||||| ||||||||||||||||    
T  9168273 attgcacttcccccccttttcattcttcttattgcattgcacttctcctccttttgattcttctg 9168209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 12177179 - 12177095
Alignment:
Q  101 ttgattcttctgattgattgtacttctctccct-tttgattcttctgattcattgcacttc-tcccccttttgattcttctgttt 183  Q
    ||||||||| |||||||||| |||| | ||||  ||| |||||||||||| |||||||||| |||| ||||||||||| ||||||    
T  12177179 ttgattcttatgattgattgcacttatgtccccattttattcttctgattgattgcacttcttcccacttttgattctcctgttt 12177095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 370460 - 370523
Alignment:
Q  125 tctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctgtttggttg 188  Q
    ||||| |||||| |||||| ||||| ||||||||||| | |||||||||| || ||||||||||    
T  370460 tctcttcctttttattcttttgattgattgcacttcttctccttttgattattatgtttggttg 370523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 370565 - 370616
Alignment:
Q  307 tcttcattggttatgttatcagctgatttggtttatttttgaggttaatttg 358  Q
    ||||||||||||||| |||  |||||||||||||||||||  ||||||||||    
T  370565 tcttcattggttatgctataggctgatttggtttatttttcgggttaatttg 370616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 10354204 - 10354282
Alignment:
Q  337 gtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    ||||||||||  ||||||||| |||  | ||| || |||||||||||||||||| | | |||||||||||| |||||||    
T  10354204 gtttattttttgggttaatttctaacaaacttaaagcttagtaagctttagcttgaagagtagtgttagaactttatat 10354282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 3775119 - 3775073
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgatt 149  Q
    |||||||||||||| ||||||  ||||||| ||||||||||||||||||    
T  3775119 ttgattcttctgatcgattgt--ttctctctcttttgattcttctgatt 3775073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 9168252 - 9168191
Alignment:
Q  104 attcttctgattg-attgtacttctctcccttttgattcttctgattcattgcacttctccc 164  Q
    |||||||| |||| |||| |||||||  ||||||||||||||||||  ||||||||||||||    
T  9168252 attcttcttattgcattgcacttctcctccttttgattcttctgatcgattgcacttctccc 9168191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 15629944 - 15629903
Alignment:
Q  130 cccttttgattcttctgatt-cattgcacttctccccctttt 170  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  15629944 cccttatgattcttctgattgcattgcacttctccccctttt 15629903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 9168351 - 9168295
Alignment:
Q  114 ttgattgtacttctctcccttttgattcttctgattcattgcacttctccccctttt 170  Q
    ||||||| ||||||| |||| ||  ||||||||| ||||||||||||||||| ||||    
T  9168351 ttgattgcacttctccccctattatttcttctgactcattgcacttctccccttttt 9168295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 3902050 - 3902164
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagt 400  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||  |||||||||||||  || || || ||||| |||||||||||| | ||| |||    
T  3902050 tgctgctcttcattggttttgatatcagctgatctggtttattttttcggttaatttgtaacaagtttaaagcttagcaagctttagcttaaagggaagt 3902149  T
Q  401 gttagaagtttatat 415  Q
    ||||||| |||||||    
T  3902150 gttagaactttatat 3902164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 3889558 - 3889672
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagt 400  Q
    |||||||||||||||||| || |||| | |||||||||||||||||  |||||||||||||| || || || ||||| || ||||||||| | ||| |||    
T  3889558 tgctgctcttcattggttttgatatcggttgatttggtttattttttgggttaatttgtaataagtttaaagcttagcaaactttagcttaaagggaagt 3889657  T
Q  401 gttagaagtttatat 415  Q
    ||||||| |||||||    
T  3889658 gttagaactttatat 3889672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 44338572 - 44338636
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccc 165  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||    
T  44338572 ttgattcttctgattgattgcacttctctcccctttgactcttctgattgattgcacttctcccc 44338636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 46963368 - 46963253
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttga-ggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    ||||||||| |||||||| || |  |||||||||||||||||||||   |||||||||||||  || || || |||||||||||| ||||| ||||||||    
T  46963368 tgctgctctccattggttttgctgacagctgatttggtttatttttcttggttaatttgtaacaagtttaaagcttagtaagcttcagcttgaggggtag 46963269  T
Q  400 tgttagaagtttatat 415  Q
    |||||||| |||||||    
T  46963268 tgttagaactttatat 46963253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 21814171 - 21814241
Alignment:
Q  217 ttctccctaccgattcttgtttggtttattttgaaatggttcttatgtttggatggttactctctttggct 287  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| || ||||||| || ||||||||||||    
T  21814171 ttctccctaccaattcttgtttggtttagtttgaaatggttcttctgcttggatgatttctctctttggct 21814241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 24486778 - 24486665
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagt 400  Q
    ||||||| ||||||||||||| ||| |  | ||||||||||||||||  || |||||||||  | ||| || |||||||||||||| ||||| |||||||    
T  24486778 tgctgctattcattggttatgctataacttcatttggtttatttttggagt-aatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagt 24486680  T
Q  401 gttagaagtttatat 415  Q
    |||||||||||||||    
T  24486679 gttagaagtttatat 24486665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 24487003 - 24486927
Alignment:
Q  112 gattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctgtttggttg 188  Q
    ||||||||| |||| ||| ||||||||||||||||||| |||| |||||| |||||||||||  |||||||||||||    
T  24487003 gattgattgcacttgtcttccttttgattcttctgattgattgtacttctaccccttttgatgattctgtttggttg 24486927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 44338857 - 44338972
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttattttt-gaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||||||||||| || || |||||||||||||||||||||  || ||||||||||||  |||| || |||||||||| | | ||| |||||| |    
T  44338857 tgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaataggcttaaagcttagtaagcctcaacttgaggggtgg 44338956  T
Q  400 tgttagaagtttatat 415  Q
    |||| ||| |||||||    
T  44338957 tgtttgaactttatat 44338972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 403
Target Start/End: Complemental strand, 17921490 - 17921400
Alignment:
Q  313 ttggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgtt 403  Q
    |||||| ||||||||||| ||||| ||||||||   |||||||||||||  ||||| || |||||||||||||||||| ||||||| ||||    
T  17921490 ttggttctgttatcagctaatttgttttattttctgggttaatttgtaacaagcttaaagcttagtaagctttagcttgaggggtactgtt 17921400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 21813953 - 21814016
Alignment:
Q  117 attgtacttctctccctttt-gattcttctgattcattgcacttctcccccttttgattcttct 179  Q
    |||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||    
T  21813953 attgcacttctctccctttttgattcttctgattcattgtatttctcccccttttgattgttct 21814016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 3889301 - 3889357
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaattt 357  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||  |||||||||    
T  3889301 tgctactcttcattggttttggtatcagctgatttggtttattttttgggttaattt 3889357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 415
Target Start/End: Original strand, 3890011 - 3890122
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag-tgt 402  Q
    ||||||||||| ||| || |||||  |||||||||||||||||  |||||||||||||  || || || |||||||||||||||||| | | |||| |||    
T  3890011 tgctcttcattagttttgatatcatttgatttggtttattttt-tggttaatttgtaacaagtttaaagcttagtaagctttagcttaaagtgtagttgt 3890109  T
Q  403 tagaagtttatat 415  Q
    ||||| |||||||    
T  3890110 tagaactttatat 3890122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 15614551 - 15614439
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgagg-ttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgt 402  Q
    |||||| |||||||| || || || | ||||||||||||||||  || ||||||| |||  ||||| ||||||||||||||| ||||  |||||||||||    
T  15614551 tgctctccattggttttgctaacaacagatttggtttatttttctgggttaatttttaacaagcttaaaacttagtaagcttcagctcgaggggtagtgt 15614452  T
Q  403 tagaagtttatat 415  Q
     |||| |||||||    
T  15614451 aagaactttatat 15614439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 6532147 - 6532207
Alignment:
Q  100 attgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctc 162  Q
    ||||||||||||||||||||| |||||||  ||| ||||||||||||||| | ||||||||||    
T  6532147 attgattcttctgattgattgcacttctc--cctattgattcttctgattgactgcacttctc 6532207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 26403127 - 26403172
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccccttttgattctt 177  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||    
T  26403127 cttttgattattctgatttatagcacttctcccccttttgattctt 26403172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 46963737 - 46963689
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||||| |||||| |||||||||| ||| ||||||||    
T  46963737 cttttgattcttctgattgattgcatttctccccctattggttcttctg 46963689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 6532114 - 6532191
Alignment:
Q  99 tattgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||| ||||||| |||||||| ||||||| || ||  ||||||||||||| |||||||||||  |||| ||||||||||||    
T  6532114 tattggttcttctcattgattgaacttctccccatt--gattcttctgattgattgcacttct--ccctattgattcttctg 6532191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 21813972 - 21814040
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgat 173  Q
    ||||||||||||||| |||||| ||||| ||||||||||| |||    | |||||||||||||| ||||||||    
T  21813972 ttgattcttctgattcattgtatttctcccccttttgattgttc----taattgcacttctcccacttttgat 21814040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 44338570 - 44338617
Alignment:
Q  133 ttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||||||||||||| |||||||||||| ||| ||||| |||||||    
T  44338570 ttttgattcttctgattgattgcacttctctcccctttgactcttctg 44338617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 44338647 - 44338710
Alignment:
Q  117 attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||||| |||||||||||||| ||||| ||||||||| ||||| | | ||||||||||    
T  44338647 attgcacttctcccccttttgattcttttgattgattgcacttatccccttatggattcttctg 44338710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 46963734 - 46963648
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgatt------cattgcacttctcc-cccttttgattcttctg 180  Q
    |||||||||||||||||||| | ||||| |||| ||| |||||||||||      |||||||||||||| | |||||||||||||||    
T  46963734 ttgattcttctgattgattgcatttctccccctattggttcttctgattgcattgcattgcacttctccactcttttgattcttctg 46963648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 24486902 - 24486829
Alignment:
Q  210 tggttgtttctccctaccgattcttgtttggtttattttgaaatggttcttatgtttggatggttactctctttg 284  Q
    ||||||||| |||||| |||| |||||||||||||  || ||||||||||| |  |||||||||| |||||||||    
T  24486902 tggttgtttttccctatcgat-cttgtttggtttagctttaaatggttcttcttattggatggtttctctctttg 24486829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 24486980 - 24486942
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgat 139  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  24486980 ttgattcttctgattgattgtacttctaccccttttgat 24486942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 24487035 - 24486969
Alignment:
Q  114 ttgattgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||| ||||||||| ||||| ||||| | |||| ||||||||| ||  ||||||||||||||||    
T  24487035 ttgattgcacttctctcacttttaattctaccgattgattgcacttgtcttccttttgattcttctg 24486969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 26403382 - 26403424
Alignment:
Q  373 cttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  26403382 cttagtaaactttagcttgaggggtagtgttagaactttatat 26403424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 3901796 - 3901849
Alignment:
Q  304 tgctcttcattggttatgttatcagctgatttggtttatttttgaggttaattt 357  Q
    ||||||||||||||| || ||||| |||||||||||||||| |  |||||||||    
T  3901796 tgctcttcattggttttgatatcacctgatttggtttatttcttgggttaattt 3901849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 8574427 - 8574481
Alignment:
Q  99 tattgattcttctgattgattgtacttctctcccttttgattcttctgattcattgc 155  Q
    ||||||||||||| ||||||||  |||||||||||||||||| ||||| || |||||    
T  8574427 tattgattcttctaattgattg--cttctctcccttttgattattctgtttgattgc 8574481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 44338644 - 44338673
Alignment:
Q  148 ttcattgcacttctcccccttttgattctt 177  Q
    ||||||||||||||||||||||||||||||    
T  44338644 ttcattgcacttctcccccttttgattctt 44338673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 11828553 - 11828470
Alignment:
Q  99 tattgattcttctgattgattgtacttctc-tcccttttgattcttctgattcattg---cacttctcccccttttgattcttctg 180  Q
    |||||||||||||| |||||||  |||||| |||||||||||||||||| || ||||    |||||| |||||| |||||||||||    
T  11828553 tattgattcttctggttgattg--cttctcctcccttttgattcttctggttgattggattacttcttccccttatgattcttctg 11828470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 46963588 - 46963534
Alignment:
Q  130 cccttttgattcttctgatt-cattgcacttctccccc---ttttgattcttctg 180  Q
    ||||||||||||||| |||| |||||||||||||||||   ||||||||||||||    
T  46963588 cccttttgattcttccgattgcattgcacttctccccccttttttgattcttctg 46963534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 5616763 - 5616851
Alignment:
Q  327 agctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    ||||||||||||||||||||  |||||||||||||  || || || ||||||| |||||||||| |||||||||||||||| |||||||    
T  5616763 agctgatttggtttattttttgggttaatttgtaacaagtttaaagcttagtaggctttagctttaggggtagtgttagaactttatat 5616851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 20242249 - 20242313
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccc 165  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||    
T  20242249 ttgattcttctgattgattgcacttctctcccctttgactcttctgattgattgcacttctcccc 20242313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 20250911 - 20250847
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgcacttctcccc 165  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||    
T  20250911 ttgattcttctgattgattgcacttctctcccctttgactcttctgattgattgcacttctcccc 20250847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 20242534 - 20242649
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttattttt-gaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||||||||||| || || |||||||||||||||||||||  || ||||||||||||  |||| || |||||||||| | | ||| |||||| |    
T  20242534 tgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaataggcttaaagcttagtaagcctcaacttgaggggtgg 20242633  T
Q  400 tgttagaagtttatat 415  Q
    |||| ||| |||||||    
T  20242634 tgtttgaactttatat 20242649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 20250626 - 20250511
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttattttt-gaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    |||||||||||||||||| || || |||||||||||||||||||||  || ||||||||||||  |||| || |||||||||| | | ||| |||||| |    
T  20250626 tgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaataggcttaaagcttagtaagcctcaacttgaggggtgg 20250527  T
Q  400 tgttagaagtttatat 415  Q
    |||| ||| |||||||    
T  20250526 tgtttgaactttatat 20250511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 20242247 - 20242294
Alignment:
Q  133 ttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||||||||||||| |||||||||||| ||| ||||| |||||||    
T  20242247 ttttgattcttctgattgattgcacttctctcccctttgactcttctg 20242294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 20242324 - 20242387
Alignment:
Q  117 attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||||| |||||||||||||| ||||| ||||||||| ||||| | | ||||||||||    
T  20242324 attgcacttctcccccttttgattcttttgattgattgcacttatccccttatggattcttctg 20242387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 20250836 - 20250773
Alignment:
Q  117 attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||||| |||||||||||||| ||||| ||||||||| ||||| | | ||||||||||    
T  20250836 attgcacttctcccccttttgattcttttgattgattgcacttatccccttatggattcttctg 20250773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 20250913 - 20250866
Alignment:
Q  133 ttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    ||||||||||||||||| |||||||||||| ||| ||||| |||||||    
T  20250913 ttttgattcttctgattgattgcacttctctcccctttgactcttctg 20250866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 16579062 - 16578989
Alignment:
Q  324 atcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggta 398  Q
    |||| |||||||||||||||||| ||||||||||||||  || || || |||| ||||||||| ||| |||||||    
T  16579062 atcaactgatttggtttattttt-aggttaatttgtaacaagtttaaagcttattaagctttaacttgaggggta 16578989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 16579232 - 16579198
Alignment:
Q  127 tctcccttttgattcttctgattcattgcacttct 161  Q
    ||||||||||||||||||||||| |||||||||||    
T  16579232 tctcccttttgattcttctgatttattgcacttct 16579198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 16583977 - 16583943
Alignment:
Q  127 tctcccttttgattcttctgattcattgcacttct 161  Q
    ||||||||||||||||||||||| |||||||||||    
T  16583977 tctcccttttgattcttctgatttattgcacttct 16583943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 20242321 - 20242350
Alignment:
Q  148 ttcattgcacttctcccccttttgattctt 177  Q
    ||||||||||||||||||||||||||||||    
T  20242321 ttcattgcacttctcccccttttgattctt 20242350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 20250839 - 20250810
Alignment:
Q  148 ttcattgcacttctcccccttttgattctt 177  Q
    ||||||||||||||||||||||||||||||    
T  20250839 ttcattgcacttctcccccttttgattctt 20250810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 16579316 - 16579280
Alignment:
Q  129 tcccttttgattcttctgattcattgcacttctcccc 165  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  16579316 tcccttttgattcttcttattgattgcacttctcccc 16579280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 327 - 415
Target Start/End: Complemental strand, 22821136 - 22821048
Alignment:
Q  327 agctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    ||||||||||||||||||||  |||||||||||||  || || || ||||||| |||||||||| |||||||||||||||| |||||||    
T  22821136 agctgatttggtttattttttgggttaatttgtaacaagtttaaagcttagtaggctttagctttaggggtagtgttagaactttatat 22821048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 16462711 - 16462781
Alignment:
Q  217 ttctccctaccgattcttgtttggtttattttgaaatggttcttatgtttggatggttactctctttggct 287  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| || ||||||| || ||||||||||||    
T  16462711 ttctccctaccaattcttgtttggtttagtttgaaatggttcttctgcttggatgatttctctctttggct 16462781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 42530811 - 42530861
Alignment:
Q  130 cccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  42530811 cccttttgattcttctgattgattgcacttcttccccttttgattcttctg 42530861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 42530816 - 42530871
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattgca 156  Q
    |||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||    
T  42530816 ttgattcttctgattgattgcacttcttccccttttgattcttctgattgattgca 42530871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 42530879 - 42530933
Alignment:
Q  121 tacttctctcccttttgattcttctgattcattgcacttct-cccccttttgatt 174  Q
    |||||||| | |||||| ||||||||||| ||||||||||| |||||||||||||    
T  42530879 tacttctccctcttttggttcttctgattgattgcacttctccccccttttgatt 42530933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 415
Target Start/End: Original strand, 34338082 - 34338147
Alignment:
Q  350 gttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttagaagtttatat 415  Q
    ||||||||||||  || || || |||||||||||||||||| ||||||||  ||| ||||||||||    
T  34338082 gttaatttgtaacaagtttaaagcttagtaagctttagcttgaggggtagctttaaaagtttatat 34338147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 38584017 - 38583938
Alignment:
Q  101 ttgattcttctgattg-attgtacttctctcccttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||| |||| | ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  38584017 ttgattcttctgattgcattgcatttctcgcccttttgattcttctgattgattgcacttctccccc-tttgattcttctg 38583938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 8986734 - 8986849
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttga-ggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    ||||||||| |||||| | || |  |||||||||||||||||||||   |||||||||||||  ||||| || |||||||||||| ||||| ||||||||    
T  8986734 tgctgctctccattgggtttgctgacagctgatttggtttatttttcttggttaatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtag 8986833  T
Q  400 tgttagaagtttatat 415  Q
    |||||||| |||||||    
T  8986834 tgttagaactttatat 8986849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 38584035 - 38583971
Alignment:
Q  117 attgtacttctctcccttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    |||| ||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  38584035 attgcacttctcccccttttgattcttctgattgcattgcatttctcgcccttttgattcttctg 38583971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 29409426 - 29409336
Alignment:
Q  99 tattgattcttctgattgattgtacttctctcccttttgattcttctgatt-----cattgcacttctcccccttttgattcttctgtttggtt 187  Q
    |||||||||||||||||||||| || |||| |||| |||||||||||||||     ||||||||||||  |||| |||||||||||||||||||    
T  29409426 tattgattcttctgattgattgcacgtctc-ccctgttgattcttctgattgattgcattgcacttct--ccctattgattcttctgtttggtt 29409336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 38583794 - 38583679
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgagg--ttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggta 398  Q
    |||||||||| ||||||| |  || |||||||||||||||||||||   |  |||||||||||  || || || |||||||||||| ||||| |||||||    
T  38583794 tgctgctcttaattggttcttctaccagctgatttggtttattttttttggattaatttgtaacaag-ttaaagcttagtaagcttcagcttgaggggta 38583696  T
Q  399 gtgttagaagtttatat 415  Q
    ||||||||| |||||||    
T  38583695 gtgttagaactttatat 38583679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 400
Target Start/End: Complemental strand, 20593709 - 20593611
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagt 400  Q
    ||||||||||| ||| || |  ||||||||||||||||||||||||  | |||||||||||  ||||| ||||||||||| ||| | ||| |||||||||    
T  20593709 tgctgctcttcgttgattctactatcagctgatttggtttattttttggattaatttgtaacaagctt-aaacttagtaaacttcaactttaggggtagt 20593611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 32290962 - 32291076
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttatttttg-aggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    ||||||||| || ||||| || || |||||||||  ||||||||||  ||||||||| ||||  ||||| || |||||||||||| ||||| ||||||||    
T  32290962 tgctgctctccaatggtt-tgctaacagctgattcagtttatttttctaggttaattggtaacaagcttaaagcttagtaagcttcagcttgaggggtag 32291060  T
Q  400 tgttagaagtttatat 415  Q
    |||||||  |||||||    
T  32291061 tgttagatctttatat 32291076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 32290694 - 32290771
Alignment:
Q  105 ttcttctgattg-attgtacttctctcccttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||| |||| ||||||| |  ||||| | ||||||||| |||||||||||||||||||||| ||||||||    
T  32290694 ttcttctgattgcattgcacttctcccatttttggtccttctgattgcattgcacttctcccccttttggttcttctg 32290771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 38583982 - 38583930
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgattcattg 154  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  38583982 ttgattcttctgattgattgcacttctcccccttt-gattcttctgattgattg 38583930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 38584091 - 38584006
Alignment:
Q  101 ttgattcttctgattg-attgtacttctctcccttttgattcttctgatt-----cattgcacttctcccccttttgattcttctg 180  Q
    ||||||||||| |||| || | ||||||| ||||||||||| |||||| |     |||||||||||||||||||||||||||||||    
T  38584091 ttgattcttctaattgcatcgcacttctcccccttttgatttttctgagtgattgcattgcacttctcccccttttgattcttctg 38584006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 38584102 - 38584045
Alignment:
Q  124 ttctctcccttttgattcttctgatt-cattgcacttctcccccttttgattcttctg 180  Q
    ||||| |||||||||||||||| ||| ||| ||||||||||||||||||||| |||||    
T  38584102 ttctcccccttttgattcttctaattgcatcgcacttctcccccttttgatttttctg 38584045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 8986368 - 8986416
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccccttttgattcttctg 180  Q
    |||||||||||||||||| |||||| |||||||||| ||| ||||||||    
T  8986368 cttttgattcttctgattgattgcatttctccccctattggttcttctg 8986416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 8986514 - 8986568
Alignment:
Q  130 cccttttgattcttctgatt-cattgcacttctccccc---ttttgattcttctg 180  Q
    |||||||||||||||||||| |||||||||||||||||   ||||||||||||||    
T  8986514 cccttttgattcttctgattgcattgcacttctccccccttttttgattcttctg 8986568  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 415
Target Start/End: Complemental strand, 42633233 - 42633125
Alignment:
Q  307 tcttcattggttatgttatcagctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtagtgttaga 406  Q
    |||||||| || ||| ||| ||||||||| |||||||||   ||||||||| |||| | ||  ||  ||||||||||||| ||| ||| ||||||||| |    
T  42633233 tcttcattagtcatgctattagctgatttagtttattttcagggttaatttataataaactaaaagtttagtaagctttaacttgaggtgtagtgttaaa 42633134  T
Q  407 agtttatat 415  Q
    |||||||||    
T  42633133 agtttatat 42633125  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 1173065 - 1172950
Alignment:
Q  301 tgctgctcttcattggttatgttatcagctgatttggtttattttt-gaggttaatttgtaatgagcttcaaacttagtaagctttagcttcaggggtag 399  Q
    ||||||||| |||||||| || || |||||||||||||| ||||||   |||||||||||||  | ||| || ||  |||||||| ||||| || |||||    
T  1173065 tgctgctctccattggttttgctaacagctgatttggttgatttttctgggttaatttgtaacaaacttaaagctccgtaagcttcagcttgagaggtag 1172966  T
Q  400 tgttagaagtttatat 415  Q
    | |||||| |||||||    
T  1172965 tattagaactttatat 1172950  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 32290800 - 32290868
Alignment:
Q  105 ttcttctgattgattgtacttctct-cccttttgattcttctgattcattgcacttctcccccttttgattct 176  Q
    |||||||||||||||| | |||||| |||||||||||||||||    |||||||||||||| |||||| ||||    
T  32290800 ttcttctgattgattgcatttctctccccttttgattcttctg----attgcacttctcccacttttgcttct 32290868  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 8986371 - 8986455
Alignment:
Q  101 ttgattcttctgattgattgtacttctctcccttttgattcttctgatt------cattgcacttctcc-cccttttgattcttc 178  Q
    |||||||||||||||||||| | ||||| |||| ||| |||||||||||      |||||||||||||| | |||||||||||||    
T  8986371 ttgattcttctgattgattgcatttctccccctattggttcttctgattgcattgcattgcacttctccactcttttgattcttc 8986455  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 154766 - 154697
Alignment:
Q  327 agctgatttggtttatttttgaggttaatttgtaatgagcttcaaacttagtaagctttagcttcagggg 396  Q
    |||| |||||||||||||||  |||||||||||||  | ||| ||||||||||| ||||| ||| |||||    
T  154766 agctaatttggtttatttttagggttaatttgtaacaaacttaaaacttagtaatctttatcttaagggg 154697  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 14749 - 14716
Alignment:
Q  132 cttttgattcttctgattcattgcacttctcccc 165  Q
    |||||||||||||||||| |||||||||||||||    
T  14749 cttttgattcttctgattgattgcacttctcccc 14716  T

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