View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_39 (Length: 392)
Name: NF1614_high_39
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 115 - 375
Target Start/End: Original strand, 8525319 - 8525570
Alignment:
| Q |
115 |
ccacaccattatgaataaatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaattttaaggaa |
214 |
Q |
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| T |
8525319 |
ccacaccattatgaatatatgattttgtggaaagtgttaccaaatggtttatgtgaatgaa-----------aactaagtgtggatgatattttaaggaa |
8525407 |
T |
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| Q |
215 |
cgcaacatctatatttatatccaaattggaaatacaatattttcagaaacaatatttagtgattgtttttccttggtggaccaacacatagcaacataaa |
314 |
Q |
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| T |
8525408 |
cacaacgtctatatttatatccaaattgaaaatacaatattttcaaaaacaatatttagtgattgtttttccttggtggaccaacacatcgcaacataaa |
8525507 |
T |
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| Q |
315 |
taattgttaatatttctattggaatctatggctggagaatgtcgatccaca--tgaaatatat |
375 |
Q |
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| T |
8525508 |
taattgttaatatttctattggaatctatggctcgagaatgtcgatgcacaattgaaatatat |
8525570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 8525220 - 8525249
Alignment:
| Q |
16 |
atgaagcaaagcagagctctcataatgatg |
45 |
Q |
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| T |
8525220 |
atgaagcaaagcagagctctcataatgatg |
8525249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 8528833 - 8528886
Alignment:
| Q |
321 |
ttaatatttctattggaatcta-tggctggagaatgtcgatccacatgaaatat |
373 |
Q |
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| T |
8528833 |
ttaatatttctattgggatctaatggctggagaatgtctatcaacataaaatat |
8528886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 25520752 - 25520646
Alignment:
| Q |
136 |
attttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaattttaaggaacgcaacatctatatttatatc |
235 |
Q |
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| T |
25520752 |
attttttggaaagtgttactaaatggtttatgtgaatgaaaaacaatagaaaagtaagtgtggatgaaatgccaagggacacaacgtaaatatttatagc |
25520653 |
T |
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| Q |
236 |
caaattg |
242 |
Q |
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||||||| |
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| T |
25520652 |
caaattg |
25520646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 376
Target Start/End: Original strand, 12251659 - 12251721
Alignment:
| Q |
314 |
ataattgttaatatttctattggaatctatggctggagaatgtcgatccacatgaaatatatg |
376 |
Q |
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| T |
12251659 |
ataattgttactatttctatttgaatctatggatggagaatgtctatccacataaaatatatg |
12251721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 12250641 - 12250710
Alignment:
| Q |
132 |
aatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaat |
205 |
Q |
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| T |
12250641 |
aatgattttgtggaaagtgt----aaatggtttaactgaaagaaaaccaatagaaaagcaagtgtggatgaaat |
12250710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 42125916 - 42125982
Alignment:
| Q |
184 |
gaaaagtaagtgtggatgaaattttaaggaacgcaacatctatatttatatccaaattggaaataca |
250 |
Q |
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| T |
42125916 |
gaaaagtaagtgtggatgaaatggtaagaaacacaacctaaatatttatagccaaattgaaaataca |
42125982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 42125748 - 42125780
Alignment:
| Q |
17 |
tgaagcaaagcagagctctcataatgatgacat |
49 |
Q |
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| T |
42125748 |
tgaagcaaagcagagctctcatcatgatgacat |
42125780 |
T |
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