View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_40 (Length: 385)
Name: NF1614_high_40
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 5995168 - 5995380
Alignment:
| Q |
1 |
cattcctcctcttcgtagccgctgccgcggtctccggttccattgcggttgtttcgctttttgggtttaacgatttgggaaaagttgggttcaggggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5995168 |
cattcctcctcttcgtagccgctgccgcggtctccgcttccgttgcggttgtttcgctttttgggtttaacgatttgggaaaagttgggttcaggggttt |
5995267 |
T |
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| Q |
101 |
tcttgctggtgccatttatgggtttcattatgttttcaaacgacgttgggttttggagtttcccattattcaggttaagctttttagttaaatgggtttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5995268 |
tcttgctggtgccatttatgggtttcattatgttttcaaacgacgttgggttttggagtttcccattattcaggttaagctttttagttaaatgggtttc |
5995367 |
T |
|
| Q |
201 |
ttaaagtttcaat |
213 |
Q |
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||||||||||||| |
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| T |
5995368 |
ttaaagtttcaat |
5995380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 5995443 - 5995531
Alignment:
| Q |
276 |
aagctagaatctggagtttttatattgtagaaatgatatttagcattgaatatttatatatccaaacgtaaatcacctgacttttagtca |
365 |
Q |
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| T |
5995443 |
aagctataatctagagtttttacat-gtagaaatgatatttaaaattgaatatttatatatccaaacgtaaatcacctgacttttagtca |
5995531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 46110981 - 46111132
Alignment:
| Q |
62 |
tgggtttaacgatttgggaaaagttgggttcaggggttttcttgctggtgccatttatgggtttcattatgttttcaaacgacgttgggttttggagttt |
161 |
Q |
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||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||| |||||||||| ||||||||||| ||| | ||||||||||||||| |
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| T |
46110981 |
tgggtttaacgattttggaagagttgggttaaggggttttcttgatggtgccattaatgggtttcactatgttttcaagcgatgatgggttttggagttt |
46111080 |
T |
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| Q |
162 |
cccattattcaggttaagctttttagttaaatgggtttcttaaagtttcaat |
213 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||| |||||||| |
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| T |
46111081 |
cccattattcgggttaagctttttagtcaaatgggtttcttaatgtttcaat |
46111132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 47455871 - 47456022
Alignment:
| Q |
62 |
tgggtttaacgatttgggaaaagttgggttcaggggttttcttgctggtgccatttatgggtttcattatgttttcaaacgacgttgggttttggagttt |
161 |
Q |
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||||||||||||||| |||| | |||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||| | ||||||||||||||| |
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| T |
47455871 |
tgggtttaacgattttggaagaattgggtcaaggggttttcttgctggtgccattgatgggtttcactatgttttcaagcgatgatgggttttggagttt |
47455970 |
T |
|
| Q |
162 |
cccattattcaggttaagctttttagttaaatgggtttcttaaagtttcaat |
213 |
Q |
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||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
47455971 |
cccattatttaggttaagctttttagtcaaatgggtttgttaaagtttcaat |
47456022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 324576 - 324510
Alignment:
| Q |
147 |
tgggttttggagtttcccattattcaggttaagctttttagttaaatgggtttcttaaagtttcaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
324576 |
tgggttttggagtttcccattattcaggttaagctttttagtcaaatgggtttcttaaagtttcaat |
324510 |
T |
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