View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_high_46 (Length: 361)
Name: NF1614_high_46
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_46 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 4242476 - 4242134
Alignment:
| Q |
1 |
gtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacaaatttcnnnnnnnnnnnnnnnggtatggttgatggatattatgaggacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
4242476 |
gtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacgaatttcagaagaaaaaaaaaaggtatggttgatggatattatgaggacc |
4242377 |
T |
|
| Q |
101 |
aagaatcattgcgttgaatatttcaaattgactagtgttgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagatacatgtgtgctgagaa |
200 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4242376 |
aagaatcattgtgttgaatatctcaaattgactagtgatgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagatacatgtgtgctgagaa |
4242277 |
T |
|
| Q |
201 |
agtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttcttttgtggtttgtgcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4242276 |
agtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttcttttgtggtttgtgcg |
4242177 |
T |
|
| Q |
301 |
ttaaatgaatgtttacgtatcaatggtcatgaatctctgctct |
343 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
4242176 |
ttaaatgaatgtttacatatcaatgctcatgaatctctgctct |
4242134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University