View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_high_47 (Length: 357)
Name: NF1614_high_47
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_47 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] scaffold0006 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 357
Target Start/End: Original strand, 29806 - 30154
Alignment:
| Q |
9 |
agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca |
108 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29806 |
agtatcaaaggaaatcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacatgaccatcatcatccaaatca |
29905 |
T |
|
| Q |
109 |
aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29906 |
aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacaacggtccttat |
30005 |
T |
|
| Q |
209 |
ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30006 |
ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaac |
30105 |
T |
|
| Q |
309 |
atgttgcaaagtttcaatacaattctgttgagctttattgattgttcta |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30106 |
atgttgcaaagtttcaatacaattctgttgagctttattgattgttcta |
30154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 357
Target Start/End: Original strand, 26397521 - 26397869
Alignment:
| Q |
9 |
agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca |
108 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397521 |
agtatcaaaggaaatcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca |
26397620 |
T |
|
| Q |
109 |
aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397621 |
aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactacagcattgcctttgcatctcctgattctaaattcaaacgacggtccttat |
26397720 |
T |
|
| Q |
209 |
ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397721 |
ctaaataatttctaacatctttctccaagcaaccaactttctcatatcttccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaac |
26397820 |
T |
|
| Q |
309 |
atgttgcaaagtttcaatacaattctgttgagctttattgattgttcta |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397821 |
atgttgcaaagtttcaatacaattctgttgagctttattgattgttcta |
26397869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 25 - 327
Target Start/End: Complemental strand, 26460173 - 26459868
Alignment:
| Q |
25 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatc---caaatcaaatgcataaaaga |
121 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||| ||| |||||| ||||||||||||||| | ||||||||||||||| |||||| | |||||||||| |
|
|
| T |
26460173 |
acatctccaaactctttgtaatcatctataccatttgcatccatccaaaatacatttttcagacgaccatcatcatcatccaaatccatcgcataaaaga |
26460074 |
T |
|
| Q |
122 |
atcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttct |
221 |
Q |
| |
|
|||||| ||||| || ||||||| || || || | |||| |||||||||||||||||||||||| ||| |||||||||| |||||||||||| |||| | |
|
|
| T |
26460073 |
atcttggattttgtttttgcataagcgtacaacattccaacattgcatttgcatctcctgattccaaagtcaaacgacgatccttatctaaaagattttt |
26459974 |
T |
|
| Q |
222 |
aacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaacatgttgcaaagtt |
321 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| | |||||||| | |||| |||||||||||||||||| |
|
|
| T |
26459973 |
aatatctttctccaagcaaccaactttctcataccctccgtgttgtttcgcaagtgtggcaaaaaatttgcttggtttcacaccaacatgttgcaaagtt |
26459874 |
T |
|
| Q |
322 |
tcaata |
327 |
Q |
| |
|
|||||| |
|
|
| T |
26459873 |
tcaata |
26459868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 25830088 - 25830426
Alignment:
| Q |
19 |
gaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaa |
118 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| ||| |||||| |||||| |||||| |||||||| | |||||||||||||||| |||||||| |
|
|
| T |
25830088 |
gaaatcacatctccaaattctttataatcatctctaccttttgcatccatccaaaacacatttcttacacgatcttcatcatccaaatcaattgcataaa |
25830187 |
T |
|
| Q |
119 |
agaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatt |
218 |
Q |
| |
|
| ||||| | |||||||||||||||| |||||||| |||||| ||||| |||| ||||| || ||||| ||||||||| |||||||||| ||| |
|
|
| T |
25830188 |
aaaatctaggattttcttcttgcataagcataaaacactccaacattgttgttgcttctcccgactctaatgccaaacgacgacttttatctaaatgatt |
25830287 |
T |
|
| Q |
219 |
tctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaacatgttgcaaa |
318 |
Q |
| |
|
||||| |||||||||||||| | || || ||||| ||||| |||||||||||||||||||| || |||| | ||||| |||| ||||||||||| ||| |
|
|
| T |
25830288 |
tctaatgtctttctccaagcagctaatgttttcataccctccatgttgtttggccattgtggcgaaaatttcggttgttttcaccccaacatgttgtaaa |
25830387 |
T |
|
| Q |
319 |
gtttcaatacaattctgttgagctttattgattgttcta |
357 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||| ||||| |
|
|
| T |
25830388 |
gtttcaatacagttcttttgagacttattgattcttcta |
25830426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 9 - 357
Target Start/End: Original strand, 276916 - 277264
Alignment:
| Q |
9 |
agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca |
108 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
276916 |
agtatcaaaggaaatcacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca |
277015 |
T |
|
| Q |
109 |
aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277016 |
aatgcataaaagaatcttgaattttcttcttgcatacgtataaaatacttcagcattgcctttgcatctcctgattctaaattcaaacgacggtccttat |
277115 |
T |
|
| Q |
209 |
ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277116 |
ctaaataatttctaacatctttctccaagcaaccaactttctcatatcttccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaac |
277215 |
T |
|
| Q |
309 |
atgttgcaaagtttcaatacaattctgttgagctttattgattgttcta |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277216 |
atgttgcaaagtttcaatacaattctgttgagctttattgattgttcta |
277264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 9 - 351
Target Start/End: Complemental strand, 26014291 - 26013949
Alignment:
| Q |
9 |
agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca |
108 |
Q |
| |
|
|||| |||| ||||| |||||||||||| ||| ||| || |||||||| ||| |||||||||||||||||||||| | ||||| |||||||||| |||| |
|
|
| T |
26014291 |
agtatcaaatgaaatcacatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacatttttcatgcgaccctcatcatccatatca |
26014192 |
T |
|
| Q |
109 |
aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttat |
208 |
Q |
| |
|
| |||||||||||||| || | ||||||||||||| |||||||| | |||| |||||||||||||||||| ||||||||| |||||| || | |||| |
|
|
| T |
26014191 |
attgcataaaagaatcctggactttcttcttgcatgagcataaaacaatccaacattgcatttgcatctccagattctaaagccaaacgccgacctttat |
26014092 |
T |
|
| Q |
209 |
ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaac |
308 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| || ||||||||||| | || |||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
26014091 |
ctaaatggtttcttacatctttctccaagcaaccaatgttttcatatcctccatattctttggccattgtggcaaaaaatttgcttgttctcactccaac |
26013992 |
T |
|
| Q |
309 |
atgttgcaaagtttcaatacaattctgttgagctttattgatt |
351 |
Q |
| |
|
||| ||||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
26013991 |
atggtgcaaagtttcaatagaatgcttttgagctttattgatt |
26013949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 9 - 351
Target Start/End: Complemental strand, 56108524 - 56108182
Alignment:
| Q |
9 |
agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatca |
108 |
Q |
| |
|
|||| |||| ||||| |||||||||||| ||| ||| || |||||||| ||| |||||||||||||||||||||| | ||||| |||||||||| |||| |
|
|
| T |
56108524 |
agtatcaaatgaaatcacatctccaaactcttgatagtcttctctaccttttgcatccacccaaaatacatttttcatgcgaccctcatcatccatatca |
56108425 |
T |
|
| Q |
109 |
aatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttat |
208 |
Q |
| |
|
| |||||||||||||| || | ||||||||||||| |||||||| | || | |||||||||||||||||| ||||||||| |||||| || | |||| |
|
|
| T |
56108424 |
attgcataaaagaatcctggactttcttcttgcatgagcataaaacaatctaacattgcatttgcatctccagattctaaagccaaacgccgacctttat |
56108325 |
T |
|
| Q |
209 |
ctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaac |
308 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| || ||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
56108324 |
ctaaatggtttcttacatctttctccaagcaaccaatgttttcatatcctccatattctttggccattgtggcaaaaattttgcttgttctcactccaac |
56108225 |
T |
|
| Q |
309 |
atgttgcaaagtttcaatacaattctgttgagctttattgatt |
351 |
Q |
| |
|
||| ||||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
56108224 |
atggtgcaaagtttcaatagaatgcttttgagctttattgatt |
56108182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 25 - 269
Target Start/End: Original strand, 20646280 - 20646524
Alignment:
| Q |
25 |
acatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaaagaatc |
124 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||| ||| |||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
20646280 |
acatctccaaactctttgtaatcatctataccatttgcatccacccaaaatacatttttcagacgaccatcatcatccaaatccatcgcataaaagaatc |
20646379 |
T |
|
| Q |
125 |
ttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatttctaac |
224 |
Q |
| |
|
||||||||| |||||||||| || ||||| |||||| |||||||||||||||||||||||| ||| |||||||| | |||||||||||| |||||||| |
|
|
| T |
20646380 |
ttgaatttttttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgattccaaagtcaaacgatgatccttatctaaaagatttctaat |
20646479 |
T |
|
| Q |
225 |
atctttctccaagcaaccaactttctcatatcctccgtgttgttt |
269 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20646480 |
atctttctccgagcaaccaactttctcatatcctccgtgttgttt |
20646524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 20646531 - 20646595
Alignment:
| Q |
293 |
ttgttctcactccaacatgttgcaaagtttcaatacaattctgttgagctttattgattgttcta |
357 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||| | | |||||||| ||||||| ||||| |
|
|
| T |
20646531 |
ttggtctcacaccaacatgttgcaaagtttcaatacattgtttttgagcttgattgattcttcta |
20646595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 351
Target Start/End: Complemental strand, 6965796 - 6965454
Alignment:
| Q |
9 |
agtagcaaaggaaattacatctccaaacactttataatcatctctaccctttccatcc-acccaaaatacattttttacacgaccatcatcatccaaatc |
107 |
Q |
| |
|
|||| |||| ||||| |||||||||||| ||| ||| | |||||||| ||| ||| | ||||||||||||||||| | ||||| |||||||||| ||| |
|
|
| T |
6965796 |
agtatcaaatgaaatcacatctccaaactcttgatagtgttctctaccttttgcatgcgacccaaaatacatttttcatgcgaccctcatcatccatatc |
6965697 |
T |
|
| Q |
108 |
aaatgcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtcctta |
207 |
Q |
| |
|
|| |||||||||||||| || ||||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||| |||||| || | ||| |
|
|
| T |
6965696 |
aattgcataaaagaatcctggattttcttcttgcatgagcataaaacaatccaacattgcatttgcatctcctgattctaaagccaaacgccgaccttta |
6965597 |
T |
|
| Q |
208 |
tctaaataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaa |
307 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| | | ||||||||||| | || |||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
6965596 |
tctaaatggtttcttacatctttctccaagcaaccaa-tgtttcatatcctccatattctttggccattgtggcaaaaaatttgcttgttctcactccaa |
6965498 |
T |
|
| Q |
308 |
catgttgcaaagtttcaatacaattctgttgagctttattgatt |
351 |
Q |
| |
|
|||| ||||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
6965497 |
catggtgcaaagtttcaatagaatgcttttgagctttattgatt |
6965454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 33002500 - 33002163
Alignment:
| Q |
19 |
gaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgcataaa |
118 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||||||||| ||| |||||||||||||||| ||| |||||||| | |||||||||||||||| |||||||| |
|
|
| T |
33002500 |
gaaatcacatctccaaattcttgataatcatctctaccttttgcatccacccaaaatacgtttcttacacgatcttcatcatccaaatcaattgcataaa |
33002401 |
T |
|
| Q |
119 |
agaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatctaaataatt |
218 |
Q |
| |
|
| ||||| | |||||||||||||||| |||||||| |||||| ||||| |||||||||| || ||||| ||||||||| |||||||||| ||| |
|
|
| T |
33002400 |
a-aatctaggattttcttcttgcataagcataaaacactccaacattgttgttgcatctcccgactctaatgccaaacgacgacttttatctaaatgatt |
33002302 |
T |
|
| Q |
219 |
tctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaacatgttgcaaa |
318 |
Q |
| |
|
||||| |||||||||||||| |||| || ||||| ||||| |||||||||||||||||||| || |||||| ||||| |||| ||||||||||| ||| |
|
|
| T |
33002301 |
tctaatgtctttctccaagcatccaatgttttcataccctccatgttgtttggccattgtggcgaaaattttggttgttttcaccccaacatgttgtaaa |
33002202 |
T |
|
| Q |
319 |
gtttcaatacaattctgttgagctttattgattgttcta |
357 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||| ||||| |
|
|
| T |
33002201 |
gtttcaatacagttcttttgagacttattgattcttcta |
33002163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 112 - 357
Target Start/End: Original strand, 845527 - 845772
Alignment:
| Q |
112 |
gcataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaattcaaacgacggtccttatcta |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||||| |||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||| |
|
|
| T |
845527 |
gcataaaagaatcttgaattttgttcttgcataagcgtaaaacactccaacattgcatttgcatctcctgatttcaaagtcaaacgacgatccttatcta |
845626 |
T |
|
| Q |
212 |
aataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaacatg |
311 |
Q |
| |
|
|| |||| ||| |||||| ||| ||||||||||||||||||| |||||||||||||| || | ||||||||| |||||||||| |||||| |||| ||| |
|
|
| T |
845627 |
aaagatttataatatctttttccgagcaaccaactttctcataccctccgtgttgtttcgcaagtgtggcaaaaattttgcttggtctcacaccaatatg |
845726 |
T |
|
| Q |
312 |
ttgcaaagtttcaatacaattctgttgagctttattgattgttcta |
357 |
Q |
| |
|
|||||||||||||||||| | || |||||||| ||||||| ||||| |
|
|
| T |
845727 |
ttgcaaagtttcaatacattgcttttgagcttgattgattcttcta |
845772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 30400363 - 30400020
Alignment:
| Q |
14 |
caaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgc |
113 |
Q |
| |
|
|||| ||||| |||| |||||| ||| ||| ||||||||||| ||| |||| || |||||||||||| |||||||| | |||||||| ||||||| | |
|
|
| T |
30400363 |
caaacgaaatcacattcccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcac |
30400264 |
T |
|
| Q |
114 |
ataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaatt--caaacgacggtccttatcta |
211 |
Q |
| |
|
| |||| ||||| ||||| |||||||||| ||||||| |||||| ||||||| |||| ||||| || |||||| |||| |||| ||||||| |
|
|
| T |
30400263 |
acaaaaaaatctaagattttattcttgcataagcataaac-actccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatcta |
30400165 |
T |
|
| Q |
212 |
aataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaacatg |
311 |
Q |
| |
|
||| |||||||| ||||||||||||||||||| || ||||||| ||| |||||||||| | | || | | |||||| ||||| |||| |||||||| |
|
|
| T |
30400164 |
aatgatttctaatgtctttctccaagcaaccaatgttttcatatcatccatgttgtttggtcgctatgacgtaaattttggttgttttcaccccaacatg |
30400065 |
T |
|
| Q |
312 |
ttgcaaagtttcaatacaattctgttgagctttattgattgttcta |
357 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
30400064 |
ttgcaaagtttcaatacaattcttttgagc-ttattgattcttcta |
30400020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 30406920 - 30406577
Alignment:
| Q |
14 |
caaaggaaattacatctccaaacactttataatcatctctaccctttccatccacccaaaatacattttttacacgaccatcatcatccaaatcaaatgc |
113 |
Q |
| |
|
|||| ||||| |||| |||||| ||| ||| ||||||||||| ||| |||| || |||||||||||| |||||||| | |||||||| ||||||| | |
|
|
| T |
30406920 |
caaacgaaatcacattcccaaactcttgatattcatctctaccttttacatctactcaaaatacatttcttacacgatcctcatcatctaaatcaatcac |
30406821 |
T |
|
| Q |
114 |
ataaaagaatcttgaattttcttcttgcatacgcataaaatactccagcattgcatttgcatctcctgattctaaatt--caaacgacggtccttatcta |
211 |
Q |
| |
|
| |||| ||||| ||||| |||||||||| ||||||| |||||| ||||||| |||| ||||| || |||||| |||| |||| ||||||| |
|
|
| T |
30406820 |
acaaaaaaatctaagattttattcttgcataagcataaac-actccaacattgcagttgcgtctcccgactctaaaaagccaaatgacgacttttatcta |
30406722 |
T |
|
| Q |
212 |
aataatttctaacatctttctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactccaacatg |
311 |
Q |
| |
|
||| |||||||| ||||||||||||||||||| || ||||||| ||| |||||||||| | | || | | |||||| ||||| |||| |||||||| |
|
|
| T |
30406721 |
aatgatttctaatgtctttctccaagcaaccaatgttttcatatcatccatgttgtttggtcgctatgacgtaaattttggttgttttcaccccaacatg |
30406622 |
T |
|
| Q |
312 |
ttgcaaagtttcaatacaattctgttgagctttattgattgttcta |
357 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
30406621 |
ttgcaaagtttcaatacaattcttttgagc-ttattgattcttcta |
30406577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 351
Target Start/End: Complemental strand, 13863782 - 13863661
Alignment:
| Q |
231 |
ctccaagcaaccaactttctcatatcctccgtgttgtttggccattgtggcaaagattttgcttgttctcactcc-aacatgttgcaaagtttcaataca |
329 |
Q |
| |
|
|||||||||||||| || ||||||| | | | || |||||||||||||||||| | |||||||||||||||||| |||||| ||||||||||||||| | |
|
|
| T |
13863782 |
ctccaagcaaccaatgttttcatatctttcatattctttggccattgtggcaaaaaatttgcttgttctcactccaaacatggtgcaaagtttcaataga |
13863683 |
T |
|
| Q |
330 |
attctgttgagctttattgatt |
351 |
Q |
| |
|
|| || |||||||||||||||| |
|
|
| T |
13863682 |
atgcttttgagctttattgatt |
13863661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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