View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_49 (Length: 353)
Name: NF1614_high_49
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 9576734 - 9576527
Alignment:
| Q |
16 |
atactctaccgaaaagatccttcatattctcatcttcaagttgagaataagttacaagctctagaaataaatttcaagctcgattaacaccgtgcgtgtt |
115 |
Q |
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| T |
9576734 |
atactctacctaaaagatccttcatattctcatcttcaagttgagaataagttataagctctagaaataaatttcaagctcgattaacaccatgtgtgtt |
9576635 |
T |
|
| Q |
116 |
attggatttttcacctaatcataaaggatataagtgttacgagttgtcaagtcgtaaaatatttgtttctataca---tatttttgaagaaaatattttc |
212 |
Q |
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| T |
9576634 |
attggatttttcaccaaatcatagaggatataagtgttacgagttgtcaagtcgtaaaatatttatttttatacatattatttttgaagaaaatattttc |
9576535 |
T |
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| Q |
213 |
cctttttt |
220 |
Q |
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|||||||| |
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| T |
9576534 |
cctttttt |
9576527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 9576443 - 9576338
Alignment:
| Q |
230 |
ctatgctgcccctacaccatatgatccaacctttattcaactcgtaaatgagctaaatcacaccacctatccccaaacaaaaacttaatcagagcaacct |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9576443 |
ctatgctgcccctacaccatatgatccaacctttattcaactcgcaaatgagctaactcacaccacctatccccaaacaaaaacttaatcagagcaacct |
9576344 |
T |
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| Q |
330 |
tcagaa |
335 |
Q |
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|||||| |
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| T |
9576343 |
tcagaa |
9576338 |
T |
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