View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_52 (Length: 349)
Name: NF1614_high_52
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8244153 - 8244392
Alignment:
| Q |
1 |
atggtgacagaatgagcatcttcaaattctaaaaattacaggtacgactgaactatgaaatcaaacagaagttagtttttctctgttatcaaagaatgat |
100 |
Q |
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| T |
8244153 |
atggtgacagaatgagcatcttcaaattctaaaaattacatgtacgactgaactatgaaatcaaacagaagttagtttttctctgttatcaaagaatgat |
8244252 |
T |
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| Q |
101 |
gctaaatatcttatggctaaaattttcacctaatgaccaagtagaccaatccagg-taactatggcctcaaatgaaaccattgtagagtactattttgtt |
199 |
Q |
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| T |
8244253 |
cctaaatatcttatggctaaaattttcacctaatgaccaagtagaccaatccaggttaactatggcctcaaatgaaaccattgtagagtactattttgtt |
8244352 |
T |
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| Q |
200 |
cctcagttaaaaaatgagcaaaatttgtgcatgactgttt |
239 |
Q |
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| T |
8244353 |
cctcagttaaaaaatgagcaaaatttgtgcatgactgttt |
8244392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 8244390 - 8244454
Alignment:
| Q |
265 |
tttgtttcaaaatacttctgcgcaaacccatcaagttcaatacaaaccgcaacccaagtgcagac |
329 |
Q |
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| T |
8244390 |
tttgttccaaaatacttctgcgcaaacccatcaagttcaatacaaaccgcaacccaagtgcagac |
8244454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 12832890 - 12832987
Alignment:
| Q |
237 |
ttttatttccaatctggaacatgctgaat------ttgtttcaaaatacttctgcgcaaacccatcaagttcaatacaaaccgcaacccaagtgcaga |
328 |
Q |
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| T |
12832890 |
ttttatttccaatctagaacatgttgaataaaaatttgttccgaaatacttctgtgcaaacccgacaacttcaatagaaaccgcaatccaagagcaga |
12832987 |
T |
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