View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_53 (Length: 341)
Name: NF1614_high_53
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 39792721 - 39792410
Alignment:
| Q |
13 |
atgaagttgtccattgattgttgtggagattcatttggagtttctttcatttccatgcaaatcaaagctaggagattggattgttgtatttgcatgttaa |
112 |
Q |
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| T |
39792721 |
atgaagttgtccattgattgttgtggagattcatttggagtttctttcatttccatgcaaatcaaagctaggagattggattgttgtaattgcatgttaa |
39792622 |
T |
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| Q |
113 |
taagctcagcttgtgacttagctagttgtgcttgaagctcattcacttccttttggaggtgacaaattgcacctgcacatccatatacagggtctcttat |
212 |
Q |
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| T |
39792621 |
taagctcagcttgtgacttagctagttgtgcttgaagctcattgacttccttttggaggtgacaaattgcacctgcacatccataaacagggtctcttat |
39792522 |
T |
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| Q |
213 |
ccttgcactagcttcataaaccatgctactaactgcatcagctctttgagactctggaagttcctgnnnnnnntggaggagaataattttatcattaatt |
312 |
Q |
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| T |
39792521 |
ccttgcactggcttcataaaccatgctactaactgcatcagctctttgagactcaggaagttcctgaaaaaaatggaggagaataattttatcattaatt |
39792422 |
T |
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| Q |
313 |
atgagtgcttga |
324 |
Q |
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| T |
39792421 |
atgagtgcttga |
39792410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 85 - 277
Target Start/End: Original strand, 22426710 - 22426902
Alignment:
| Q |
85 |
agattggattgttgtatttgcatgttaataagctcagcttgtgacttagctagttgtgcttgaagctcattcacttccttttggaggtgacaaattgcac |
184 |
Q |
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| T |
22426710 |
agattggtttgttggagtttcatgtttacaacctcagcttgtgatttggctagttgtgcttgaagctcattgacttgcttttggagttggcaaattgctc |
22426809 |
T |
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| Q |
185 |
ctgcacatccatatacagggtctcttatccttgcactagcttcataaaccatgctactaactgcatcagctctttgagactctggaagttcct |
277 |
Q |
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| T |
22426810 |
ctgcacaaccataaactgggtctctaactcttgcactagcctcataaaccatgcttgtcactgcatcagctctttgatcttctggaagttcct |
22426902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 32510516 - 32510601
Alignment:
| Q |
176 |
aaattgcacctgcacatccatatacagggtctcttatccttgcactagcttcataaaccatgctactaactgcatcagctctttga |
261 |
Q |
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| T |
32510516 |
aaattgcccctacacaaccatacacagggtctctcactcttgcattagcttcatacaccatgctactcactgcatcccctctttga |
32510601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 262
Target Start/End: Original strand, 43140955 - 43141100
Alignment:
| Q |
117 |
ctcagcttgtgacttagctagttgtgcttgaagctcattcacttccttttggaggtgacaaattgcacctgcacatccatatacagggtctcttatcctt |
216 |
Q |
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||||||||||| || ||||| |||| ||| | |||| | |||| ||||| || ||||| |||||||||||||| ||||| || ||||| ||||||||| |
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| T |
43140955 |
ctcagcttgtgctttggctagctgtgtttgtaactcactaacttgtttttgaagttgacatattgcacctgcacacccataaactgggtcccttatcctt |
43141054 |
T |
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| Q |
217 |
gcactagcttcataaaccatgctactaactgcatcagctctttgag |
262 |
Q |
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||| | ||||||||||||||||| || |||||||| ||||| |||| |
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| T |
43141055 |
gcatttgcttcataaaccatgctgcttactgcatctgctctctgag |
43141100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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