View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_54 (Length: 340)
Name: NF1614_high_54
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 4749438 - 4749747
Alignment:
| Q |
18 |
agaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttgtggaccgttatcaacct |
117 |
Q |
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| T |
4749438 |
agaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttgtggaccgttatcaacct |
4749537 |
T |
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| Q |
118 |
cactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgtggcattttcaaaatttgttactg-nnnnnnnnnnaacaaacaa |
216 |
Q |
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| T |
4749538 |
cactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgtggcattttcaaaatttgttactgtttttttttttaacaaacaa |
4749637 |
T |
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| Q |
217 |
aactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaatatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4749638 |
aactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggacttacacatacggaaattaggcaaatgaaatatc |
4749737 |
T |
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| Q |
317 |
tttcacaggt |
326 |
Q |
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|||| ||||| |
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| T |
4749738 |
tttctcaggt |
4749747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 4757923 - 4758054
Alignment:
| Q |
22 |
gttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttgtggaccgttatcaacctcact |
121 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||| | |
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| T |
4757923 |
gttggaggatgaagacattatagacttgcttcttgtgttcttgttagctggtcatgaaagctctgctcatggaattttgtggactattatttacctcatt |
4758022 |
T |
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| Q |
122 |
aatcatccacatgtcttcgaaagagccaaggt |
153 |
Q |
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| T |
4758023 |
gatcatccacatgtcttccaaagggccaaggt |
4758054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 326
Target Start/End: Original strand, 4758195 - 4758293
Alignment:
| Q |
228 |
ctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaatatctttcacaggt |
326 |
Q |
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|||||||||||||||||||||||| |||| || |||||||||| |||||||||| | | | || |||||||| ||||||| ||||||||||| |||| |
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| T |
4758195 |
ctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactgaaccttaaggaaattaagcaaatgcaatatctttcaaaggt |
4758293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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