View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_56 (Length: 337)
Name: NF1614_high_56
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_56 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 33950049 - 33950376
Alignment:
| Q |
8 |
ccaagaatatatacatgtatcttatttgaatatttcaaatttaataaatatgattagttttagataagtttcatgaatgattgtcaatattttaaaataa |
107 |
Q |
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| T |
33950049 |
ccaaaaatatatacatgtatcttatttgaatatttcaaatttaataaatatgattagttttagataagtttcatgaatgatcgtcaatattttaaaataa |
33950148 |
T |
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| Q |
108 |
taatgtcaaatacaatgtacaatcgcggcgtaaaagaataaacaaaacatggtatgaattgtacatttgtttatttttatggtgaaatggcctactgaat |
207 |
Q |
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| T |
33950149 |
taatgtcaaatacaatgtacaatcgcggcgtaaaagaataaacaaaacatggtatgaattgtacatttgtttatttttatggtgaaatggcctactgaat |
33950248 |
T |
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| Q |
208 |
aatgccacacgttaacatnnnnnnnccaaattttaatgagtaagtaacacataaccaagtttgtttgtttctgacaaaacagcg-tccgaatatttaagt |
306 |
Q |
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|||||||||||||||||| ||| ||||||| ||||| |||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
33950249 |
aatgccacacgttaacataaaaaaaccatattttaacgagta---cacacattaccaagtttgtttctttcttacaaaacagcgttccgaatatttaagt |
33950345 |
T |
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| Q |
307 |
nnnnnnngacaaagaaaggaaagaataacga |
337 |
Q |
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|||||||||||||||||||||||| |
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| T |
33950346 |
aaaaaaagacaaagaaaggaaagaataacga |
33950376 |
T |
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