View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_high_6 (Length: 719)
Name: NF1614_high_6
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 662; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 20 - 714
Target Start/End: Original strand, 586006 - 586700
Alignment:
| Q |
20 |
gaagttccagccgaccaaaaactaaaggtttgtcgctagtctcttttttgctgctggtttgttcagtgacaggtcagctggatgttgaaggtttctttat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
586006 |
gaagttccagccgaccaaaaactaaaggtttgtcgctagtctcttttttgctgctggtttgttcagtgacaggtcagctcgatgttgaaggtttctttat |
586105 |
T |
|
| Q |
120 |
tgtattgttgactaatttgcttctttttatatatcaacaatacatataattgatatcttctacatcgttgttaatagatggactttgccaacctacctta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
586106 |
tgtattgttgactaatttgcttctttttatatatcaacaatacatataattgatatcttctacatcgttgttaatagatggactttgccaacctacctta |
586205 |
T |
|
| Q |
220 |
tttcatttggttttgtgctaaaaatcttttctaccagaatcttatgcccattacggatggtaaaactgtatttgtcatcgtcataatcttggttgatgtt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
586206 |
tttcatttggttttgtgctaaaaatcttttctaccagaatcttatgcccattacggatggtaaaactgtatttgtcatcgtcataatcttggttgatgtt |
586305 |
T |
|
| Q |
320 |
acagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaagaaaactagcagcttcattggaaagcgtgaaagaatcaagtgaaatga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
586306 |
acagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaagaaaactagcagcttcattggaaagcgtgaaagaatcaagtgaaatga |
586405 |
T |
|
| Q |
420 |
ccggaggagataataaagatgcaaatgttgctggcaacttgcaagaaacaacctcactagagtttgagaaactcaggatatgatgacagggaaagttggt |
519 |
Q |
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| T |
586406 |
ccggaggagataataaagatgcaaatgttgctggcaacttgcaagaaacaacctcactagagtttgagaaactcaggatatgatgacagggaaagttggt |
586505 |
T |
|
| Q |
520 |
tagatcagaaatgtaattttgatattttgaaaaaatatccagtaccatacttttgaaaacatatatcnnnnnnnggatatttcttggatatatgtatata |
619 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
586506 |
tagatcagaaatgtaattttgatattttgaaaaaatatccagtaccatacttttgaaaacatatatctttttttggatatttcttggatatatgtatata |
586605 |
T |
|
| Q |
620 |
tccaagtgtacagtagaattatcagtgtccattacatgtatgacacagacacatatctcgttacatctgacccatcccgtctctgctcctcctca |
714 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
586606 |
tccaagtgtacagtagaattatcagtgtccattacatgtatgacacagacacatatctcgttacatctgacccatcccgtctctgttccttctca |
586700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 187 - 505
Target Start/End: Complemental strand, 536655 - 536323
Alignment:
| Q |
187 |
ttgttaatagatggactttgccaacctaccttatt---tcatttggttttgtgctaaaaatcttttctaccagaatcttatgcccattacggatggtaaa |
283 |
Q |
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|||||||| ||||||| ||||| |||||||||| | |||||||| ||||| | ||||| |||||| ||||||||||||||| ||||| ||||||||| |
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| T |
536655 |
ttgttaattgatggaccttgcccacctaccttaatccttcatttggctttgtaatgaaaatattttctgccagaatcttatgcctattactgatggtaaa |
536556 |
T |
|
| Q |
284 |
actgtatttgtcat-----------cgtcataatcttggttgatgttacagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaag |
372 |
Q |
| |
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| ||| |||| ||| ||| | ||||| |||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||||| |
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| T |
536555 |
attgtctttgacatgttttagtcaacgtaaatatctttgttgatgttacaactactgtagattcagatgcgagtgaagtgggagatgaggaagttcaaag |
536456 |
T |
|
| Q |
373 |
aaaactagcagcttcattggaaagcgtgaaagaatcaagtgaaatgaccggaggagataataaagatgcaaatgttgctggcaacttgcaagaaacaacc |
472 |
Q |
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| || | ||||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||||| ||||||||||||||||||| |
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| T |
536455 |
agcgctggaagcttcatttaaaagcgtgaaagaatcaagtgaaattgctggaggagataataaatatgaaaatgttgctagcaacttgcaagaaacaaca |
536356 |
T |
|
| Q |
473 |
tcactagagtttgagaaactcaggatatgatga |
505 |
Q |
| |
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| | ||||||||||||||| |||||||||| |
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| T |
536355 |
gtaatggagtttgagaaactcgtgatatgatga |
536323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 3028397 - 3028311
Alignment:
| Q |
290 |
tttgtcatcgtcataatcttggtt---gatgttacagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaaga |
373 |
Q |
| |
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||||||| | |||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||| |
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| T |
3028397 |
tttgtcaccatcataatcttggttcatgatgttacagctactttagattcagattcaagtgaagaggaggatgaccaagttcaaaga |
3028311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 3032411 - 3032326
Alignment:
| Q |
290 |
tttgtcatcgtcataatcttggtt---gatgttacagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaag |
372 |
Q |
| |
|
||||||| |||||||||||||||| |||||| ||||||||||||||||||| || ||| |||| |||||| ||||||||||| |
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| T |
3032411 |
tttgtcaccgtcataatcttggttcatgatgttgcagctactgtagattcagattcaagtaaagaaatggatgacgaagttcaaag |
3032326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 298 - 469
Target Start/End: Complemental strand, 29813357 - 29813186
Alignment:
| Q |
298 |
cgtcataatcttggttgatgttacagctactgtagattcagaatcgagtgaagaggaggatgaggaagttcaaagaaaactagcagcttcattggaaagc |
397 |
Q |
| |
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||||||||| ||||||||| || |||||||| |||||||||| ||| | |||||||||||||||| ||||||||| || |||||||| ||||||||| |
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| T |
29813357 |
cgtcataattttggttgatatttcagctactttagattcagatgcgaataaagaggaggatgaggaggttcaaagagcgctggcagcttcgttggaaagc |
29813258 |
T |
|
| Q |
398 |
gtgaaagaatcaagtgaaatgaccggaggagataataaagatgcaaatgttgctggcaacttgcaagaaaca |
469 |
Q |
| |
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||||||||||||||||||||| | | ||||||| ||||||| |||||||||||||||||| ||||||||||| |
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| T |
29813257 |
gtgaaagaatcaagtgaaatggctgaaggagatgataaagaagcaaatgttgctggcaacgtgcaagaaaca |
29813186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 29813607 - 29813497
Alignment:
| Q |
20 |
gaagttccagccgaccaaaaactaaaggtttgtcgctagtctcttttttgctgctggtttgttcagtgacaggtcagctggatgttgaaggtttctttat |
119 |
Q |
| |
|
||||||| |||| |||||| |||||||||||| ||| || ||||| ||||||||||||||||||| ||||||||| || |||||| || |||| || |
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| T |
29813607 |
gaagttctagcccaccaaagcctaaaggtttgttgctcgtttctttca--ctgctggtttgttcagtgataggtcagctcgacgttgaaagtgtcttcat |
29813510 |
T |
|
| Q |
120 |
tgtattgttgact |
132 |
Q |
| |
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||| |||||||| |
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| T |
29813509 |
tgtcctgttgact |
29813497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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