View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_high_62 (Length: 328)

Name: NF1614_high_62
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_high_62
NF1614_high_62
[»] chr4 (1 HSPs)
chr4 (19-307)||(24224991-24225284)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 24225284 - 24224991
Alignment:
Q  19 tgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaaaactcaaacgaaaagaacacccatacacatcccaaaacatgacaaaactata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24225284 tgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaaaactcaaacaaaaagaacacccatacacatcccaaaacatgacaaaactata 24225185  T
Q  119 catatcaaccaacaaccggagcaaaccgaacaaacattaaccaatgacgacaagcatcaaag-----aaacaagtaaataccacggtgaaagaataactt 213  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     |||||||||||||||| ||||||||||||||||    
T  24225184 catatcaaccaacaaccggagcagaccgaacaaacattaaccaatgacgacaagcatcaaagaaattaaacaagtaaataccatggtgaaagaataactt 24225085  T
Q  214 ctacgtctctaaaatccaaaatattgatgattgatgcaattaatttcaaaacgtgctcaaaaccatccaaacaatatgcacaccgtgaatctaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24225084 ctacgtctctaaaatccaaaatattgatgattgatgcaattaatttcaaaacgtgctcaaaaccatccaaacaatatgcacaccgtgaatctaa 24224991  T

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